FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0524.ptfa, 729 aa vs ./tmplib.26680 library 1768288 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.4863+/-0.00465; mu= 12.3778+/- 0.311 mean_var=96.5431+/-21.768, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.1305 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1026 ( 808 res) mfj07295 ( 808) 156 40 0.0011 mKIAA1230 ( 990 res) mfj00035 ( 990) 149 39 0.0031 >>mKIAA1026 ( 808 res) mfj07295 (808 aa) initn: 206 init1: 80 opt: 156 Z-score: 158.8 bits: 40.1 E(): 0.0011 Smith-Waterman score: 162; 21.937% identity (24.558% ungapped) in 506 aa overlap (75-544:125-612) 50 60 70 80 90 100 mKIAA0 RSGGASPWWAAGGRGSREVSPGVGTEVQGALERSLPE-LQQALSELKQASAARAVGAGLA : :.. : : . : : . .. .....: mKIAA1 DSAVATMENHQHGAQVLLREEVVQLQEEVHLLRQMKEMLAKDLEESQGGKCSEVLSATEL 100 110 120 130 140 150 110 120 130 140 150 160 mKIAA0 EVFQLVEEAWLLPAVGREVAQGL-CDAIRLDG-GLDLLLRLLQA-PELETRVQAARLLEQ .: :::.. : : ..:. :.. : :: : ::. .. : ::.: . : . mKIAA1 RV-QLVQKEQEL-ARAKEALQAMKADRKRLKGEKTDLVSQMQQLYATLESREEQLRDF-- 160 170 180 190 200 210 170 180 190 200 210 mKIAA0 ILVAENRDRVARIGLGVILNLAKE-----REPVELARSVAGILEHMFKHSEETCQRLVAA .: .. . . .. :::: :: :: :.. .: . . mKIAA1 ---IRNYEQHRKESEDAVKALAKEKDLLEREKWELRRQAKEATDHAAALRSQLDLKDNRM 220 230 240 250 260 220 230 240 250 260 mKIAA0 GGLDAVLYWCRRTDPALL-----RHCALALANCALHGGQ--TVQRCM-----VEKRAAEW :.: : ... .: :: .. .:.:.: .:: . ... mKIAA1 KELEAELAMAKQSLATLTKDVPKRHSLAMPGETVLNGNQEWVVQADLPLTAAIRQSQQTL 270 280 290 300 310 320 270 280 290 300 310 320 mKIAA0 LFPLAFSKEDELLRLHACLAVAVLATNKEVEREVEHSGTLALVEPLVASLDPGRFARCLV :. .:. : . . . : ..:.: . .. : . : mKIAA1 YHSHPPHPADRQVRVSPCHSRQPSVISDASAAEGDRSSTPSDIN----SPRHRTHSLCNG 330 340 350 360 370 380 330 340 350 360 370 380 mKIAA0 DASDTSQGRGPDDL-QSLVLLLDSSRLEAQCIGAFYLCAEAAIKSLQGKTKVFSDIGAIQ :. : . . ::: : :..: . . .: ... . :: . : : .. mKIAA1 DSPGPVQKSLHNPIVQSLEDLEDQKRKKKKEKMGFGSISRVFAR---GKQRKSLDPGLFD 390 400 410 420 430 440 390 400 410 420 430 mKIAA0 SLKRLVSYSTNGTTSALAKRAL-RLLGEEVPRRILPCVASWKEAEVQTWLQQIG----FS . : . .. . . ... . :: :. : : .. :: . ::.::. . . mKIAA1 DSDSQCSPTRHSLSLSEGEEQMDRLQHVELVRTT-P-MSHWKAGTVQAWLEVVMAMPMYV 450 460 470 480 490 440 450 460 470 480 mKIAA0 QYC-ENFR-GDLLLRLTDEELQTDLGMKSSITRKRF------FRELTELKTFASYATCDR . : :: . : .:: :.::.:. ::. ::. :... .:. ..... : :. mKIAA1 KACAENVKSGKVLLSLSDEDLELGLGVCSSLHRRKLRLAIEDYRDAEAGRSLSKAADLDH 500 510 520 530 540 550 490 500 510 520 530 540 mKIAA0 SNLAD-WLGSLDPRFRQYTYGLVSCGLDRSLLHRVSEQQLLEDCGIRLGVHRTRILSAAR .: ::. : . ::. .. . .: .:. . ...: . .. :.. :: mKIAA1 HWVAKAWLN--DIGLSQYSQAFQNHLVDGRMLNSLMKRDLEKHLNVSKKFHQVSILLGIE 560 570 580 590 600 610 550 560 570 580 590 600 mKIAA0 EMLHSPLPCTGGKLSGDTPDVFISYRRNSGSQLASLLKVHLQLHGFSVFIDVEKLEAGKF mKIAA1 LLYQVNFSREALQERRARCETQNTDPVVWTNQRVLKWVRDIDLKEYADNLTNSGVHGAVL 620 630 640 650 660 670 >>mKIAA1230 ( 990 res) mfj00035 (990 aa) initn: 98 init1: 72 opt: 149 Z-score: 150.5 bits: 38.9 E(): 0.0031 Smith-Waterman score: 149; 27.703% identity (31.298% ungapped) in 148 aa overlap (394-529:597-739) 370 380 390 400 410 420 mKIAA0 AIKSLQGKTKVFSDIGAIQSLKRLVSYSTNGTTSALAKRAL---RLLGEEVPRRILPCVA : : : : : : ::. .: : mKIAA1 RGIMRLFGKLRRSQSTTFNPDDMSEPEFKRGGTRATAGPRLGWSRDLGQSNSDLDMP-FA 570 580 590 600 610 620 430 440 450 460 470 mKIAA0 SWKEAEVQTWLQQIGFSQYCENFR-----GDLLLRLTDEELQTDLGMKSSITRKRFFREL .: . .: .:: . :...: . . :. ::. ....:. .::.: :. ::.. : mKIAA1 KWTKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLAL 630 640 650 660 670 680 480 490 500 510 520 530 mKIAA0 TELKTF--ASYATCDRSNLADWLGSLD-PRFR-QYTYGLVSCGLDRSLLHRVSEQQLLED : . ..:. : . .. :: .. :... :. : : : .:: .. ..:: mKIAA1 QALGSEEETNYGKLDFNWVTRWLDDIGLPQYKTQFDEGRV----DGRMLHYMTVDDLLSL 690 700 710 720 730 740 540 550 560 570 580 590 mKIAA0 CGIRLGVHRTRILSAAREMLHSPLPCTGGKLSGDTPDVFISYRRNSGSQLASLLKVHLQL mKIAA1 KVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENSITPSEVQQWTNHRVMEWLRSVDL 750 760 770 780 790 800 729 residues in 1 query sequences 1768288 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:22:17 2006 done: Mon Mar 27 10:22:18 2006 Scan time: 0.880 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]