FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4043.ptfa, 522 aa
 vs ./tmplib.26680 library

1768495 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.0981+/-0.00668; mu= -3.9117+/- 0.445
 mean_var=259.6384+/-60.678, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0796

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0282  ( 831 res)   mbh04731                   ( 831)  306   48 3.1e-06


>>mKIAA0282  ( 831 res)   mbh04731                        (831 aa)
 initn: 913 init1: 297 opt: 306  Z-score: 204.4  bits: 48.1 E(): 3.1e-06
Smith-Waterman score: 1002;  45.431% identity (58.389% ungapped) in 383 aa overlap (23-393:33-342)

                       10        20        30            40        
mKIAA4         LKSADIASPAALVFGALTILGWSRAALAAGAA----MEEELKCPVCGSLFRE
                                     ::  ::.. .    ::::::::::::..::
mKIAA0 GEGATTAAAGQGAGHHRPIGCFARSGPLRRSRCCLASSQVPMEEMEEELKCPVCGSFYRE
             10        20        30        40        50        60  

       50        60        70        80        90       100        
mKIAA4 PIILPCSHNVCLPCARTIAVQTPDGEQHLPPPLLLSRGAAAAATPPDQDAAAGATSGGAG
       :::::::::.:  :::.: ::::..:                 .: .. :.      :.:
mKIAA0 PIILPCSHNLCQACARNILVQTPESE-----------------SPQSRRAS------GSG
             70        80                         90               

      110       120       130       140               150       160
mKIAA4 ANTAGGLGGGATGGGDHADKLSLYSETDSGYGSY--------TPSLKSPNGVRVLPMVPA
       ..    :           ::.:::::.:::::::        ::  ::::::::.: .  
mKIAA0 VSDYDYLD---------LDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMP
     100                110       120       130       140       150

              170       180       190       200       210       220
mKIAA4 PPGSSAAAARGAACSSLCSSSSSITCPQCHRSASLDHRGLRGFQRNRLLEGIVQRYQQGR
       :: .  . : . .  . :     :::::::::  :: :::::: .::.:::...::::..
mKIAA0 PPPTHLSPALAPVPRNSC-----ITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSK
              160            170       180       190       200     

              230       240       250       260       270       280
mKIAA4 GVVPGAAAAPAVAICQLCDRTPPEPAATLCEQCDVLYCATCQLKCHPSRGPFAKHRLVQP
            :::      ::::...: : :...::::::.::  :.:.::: :::.::::::  
mKIAA0 -----AAALK----CQLCEKAPKE-ATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLV--
              210           220        230       240       250     

              290       300       310       320       330       340
mKIAA4 PPPPTPPEATPAVTGTSTASSAGGCRSPGGAGASAPRKFPTCPEHEMENYSMYCVSCRSP
         ::.  ...  ..                     :::  :: .::.::.:::::.:. :
mKIAA0 --PPAQGRVSRRLS---------------------PRKVSTCTDHELENHSMYCVQCKMP
             260                            270       280       290

              350       360       370       380       390       400
mKIAA4 VCYMCLEEGRHSKHEVKPLGATWKQHKVSVGCAERQPGWKKRDSLNPFLVGLRAKQESLH
       :::.:::::.::.:::: ::: :: :: ... :    . . ... . ::: ::.      
mKIAA0 VCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEA-KEFLVQLRTMVQQIQ
              300       310       320       330        340         

              410       420       430       440       450       460
mKIAA4 PSIHPSIHPIHSSVRPSTHTHTHTHTHPSFHLPTCSSFHRSMYACIHLSIHWAWVSTHAS
                                                                   
mKIAA0 ENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGL
     350       360       370       380       390       400         




522 residues in 1 query   sequences
1768495 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:00:04 2006 done: Mon Mar 27 11:00:05 2006
 Scan time:  0.720 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]