FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1272.ptfa, 467 aa vs ./tmplib.26680 library 1768550 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.7953+/-0.00411; mu= 21.3193+/- 0.276 mean_var=84.7214+/-19.250, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.1393 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0474 ( 726 res) mbe00481 ( 726) 281 66 7.7e-12 mKIAA0440 ( 1510 res) mbg05561 (1510) 235 58 6.8e-09 mKIAA1389 ( 1185 res) mbh01631 (1185) 234 57 6.9e-09 mKIAA4074 ( 1099 res) mfj12253 (1099) 217 54 7.1e-08 mKIAA1219 ( 1172 res) mbg01754 (1172) 148 40 0.0011 >>mKIAA0474 ( 726 res) mbe00481 (726 aa) initn: 237 init1: 80 opt: 281 Z-score: 305.0 bits: 66.4 E(): 7.7e-12 Smith-Waterman score: 283; 27.350% identity (29.767% ungapped) in 234 aa overlap (224-438:239-472) 200 210 220 230 240 250 mKIAA1 PFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQE : : . ..: . .. :..:.: :: mKIAA0 CLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQT 210 220 230 240 250 260 260 270 280 290 300 310 mKIAA1 DKCSILANERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQ-RNGSTGQTAPYYATSTVEVI .. ...... : :. .:. :: .: :. :: :::. .:.:: . : . :.. mKIAA0 SEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIM 270 280 290 300 310 320 320 330 340 350 360 mKIAA1 FHVSTRMP-SVSDDSLTKKLRHLGNDEVHIVWSEHSRDYRRGIIPTAFGDVSIIIYPM-- :::::..: . .: . .. ::.::: : .:..... . .: . : . ... mKIAA0 FHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGG 330 340 350 360 370 380 370 380 390 400 410 mKIAA1 --KNHMFFITITKKPEVPFFGP-LFDGAIV-SGK-----LLPSLICA--TCINASRAVK- . .. ...: . .:::::: : : :. .: :: .:: : .: .: . .: mKIAA0 GPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKL 390 400 410 420 430 440 420 430 440 450 460 mKIAA1 ---CLIPLYQSFYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSVSGTD : ...::: .. .... mKIAA0 EERTRAALLETLYEELHIHSQSMMGLGSDDDKMENGSGGGGFFESFKRVIRSRSQSMDAM 450 460 470 480 490 500 >>mKIAA0440 ( 1510 res) mbg05561 (1510 aa) initn: 245 init1: 84 opt: 235 Z-score: 252.0 bits: 57.6 E(): 6.8e-09 Smith-Waterman score: 242; 28.218% identity (29.843% ungapped) in 202 aa overlap (224-415:322-522) 200 210 220 230 240 250 mKIAA1 PFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQE :. ..: .:: . .:....: :: mKIAA0 TARGLPLKEVLEHVIPELNVQCLRLAFNTPKVTEQLMKLDEQGLNYQQKVGIMYCKAGQS 300 310 320 330 340 350 260 270 280 290 300 310 mKIAA1 DKCSILANERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQ-RNGSTGQTAPYYATSTVEVI . . :: .. :.:.:. :: .: :. . . :. .. ::: . : . . :.. mKIAA0 TEEEMYNNESAGPAFEEFLQLLGERVRLKGFEKYRAQLDTKTDSTGTHSLYTTYKDYEIM 360 370 380 390 400 410 320 330 340 350 360 mKIAA1 FHVSTRMPSVSDDS--LTKKLRHLGNDEVHIVWSEH-SRDYRRGIIPTAFGDVSIIIY-- ::::: .: . ... : .: ::.::: : ::..: .. . : . : : .:. mKIAA0 FHVSTMLPYTPNNKQQLLRK-RHIGNDIVTIVFQEPGAQPFSPKNIRSHFQHVFVIVRAH 420 430 440 450 460 470 370 380 390 400 410 420 mKIAA1 -PMKNHMFF-ITITKKPEVPFFGPLFDGAIVSGK--LLPSLICATCINASRAVKCLIPLY : . . . ...:.. .:: ::: . ... : .. ... : ::: :. mKIAA0 NPCTESVCYSVAVTRSRDVPSFGPPIPKGVTFPKSNVFRDFLLAKVINAENAAHKSEKFR 480 490 500 510 520 530 430 440 450 460 mKIAA1 QSFYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSVSGTD mKIAA0 AMATRTRQEYLKDLAEKNVTNTPIDPSGKFPFISLASKKKEKSKPYPGAELSSMGAIVWA 540 550 560 570 580 590 >>mKIAA1389 ( 1185 res) mbh01631 (1185 aa) initn: 243 init1: 109 opt: 234 Z-score: 251.9 bits: 57.3 E(): 6.9e-09 Smith-Waterman score: 248; 27.273% identity (28.571% ungapped) in 242 aa overlap (224-455:54-294) 200 210 220 230 240 250 mKIAA1 PFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQE :. ..: .:: . :::...: :: mKIAA1 TARGLPLKEVLEYVIPELSIQCLRQAANSPKVPEQLLKLDEQGLSFQHKIGILYCRAGQS 30 40 50 60 70 80 260 270 280 290 300 310 mKIAA1 DKCSILANERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQ-RNGSTGQTAPYYATSTVEVI . . :: .. :.:.:. :: .: :. . . :. .. ::: . : . . :.. mKIAA1 TEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDFELM 90 100 110 120 130 140 320 330 340 350 360 mKIAA1 FHVSTRMPSVSDD--SLTKKLRHLGNDEVHIVWSEHSR-DYRRGIIPTAFGDVSIIIY-- ::::: .: . .. .: .: ::.::: : ::..: . . : . : : .:. mKIAA1 FHVSTLLPYMPNNRQQLLRK-RHIGNDIVTIVFQEPGALPFTPKNIRSHFQHVFVIVKVH 150 160 170 180 190 200 370 380 390 400 410 420 mKIAA1 -P-MKNHMFFITITKKPEVPFFGPLFDGAIVSGK--LLPSLICATCINASRAVKCLIPLY : .: . . .... .:: ::: . ... : .. ... : ::: :.. . mKIAA1 NPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFR 210 220 230 240 250 260 430 440 450 460 mKIAA1 QSFYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSVSGTD . : ::. . .: . : . : : mKIAA1 AMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKERVKPRKDAHLFSIGAIMWH 270 280 290 300 310 320 mKIAA1 VVARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVSIKAFYERGE 330 340 350 360 370 380 >>mKIAA4074 ( 1099 res) mfj12253 (1099 aa) initn: 158 init1: 68 opt: 217 Z-score: 233.7 bits: 53.8 E(): 7.1e-08 Smith-Waterman score: 230; 24.573% identity (26.568% ungapped) in 293 aa overlap (179-458:333-616) 150 160 170 180 190 200 mKIAA1 DQEKAIMEVILRQSAQEDEYVQRCNSDSSVTVTSQGQPSPVEPRG--PFYFCRLLLDDLG :.. .. : : ::: : : ::. .. mKIAA4 RREEKEGSGGGTLHSYRVIVRTTQLRTLRGTISEDALP-PGPPRGLSP----RKLLEHVA 310 320 330 340 350 210 220 230 240 250 260 mKIAA1 MNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQEDKCSILANERGSQ ..: . . :. : : .:: . .:....: :: .. . :.... mKIAA4 PRL--SPTCLRLGSASPKVPRTLLTLDEQVLSFQRKVGILYCRAGQGSEEEMYNNQEAGA 360 370 380 390 400 410 270 280 290 300 310 320 mKIAA1 AYEDFVAGLGWEVDLSTHCGFMGGLQ-RNGSTGQTAPYYATSTVEVIFHVSTRMPSVSDD :. .:.. :: : :. .. . :. .. ::: . : . . :..::::: .: . .. mKIAA4 AFMQFLTLLGDVVRLKGFESYRAQLDTKTDSTGTHSLYTTYQDHEIMFHVSTMLPYTPNN 420 430 440 450 460 470 330 340 350 360 370 mKIAA1 S--LTKKLRHLGNDEVHIVWSEH-SRDYRRGIIPTAFGDVSIIIY---PMKNHM-FFITI . : .: ::.::: : ::..: :. . : . : : ... : : . ... mKIAA4 QQQLLRK-RHIGNDIVTIVFQEPGSKPFCPTTIRSHFQHVFLVVRAHAPCTPHTSYRVAV 480 490 500 510 520 530 380 390 400 410 420 430 mKIAA1 TKKPEVPFFGPLFD---GAIVSGKLLPSLICATCINASRAVKCLIPLYQSFYEERALYLE .. ..: ::: . : .... . ... : .:. .:. .. . : ::. mKIAA4 SRTQDTPAFGPALPEGGGPFAANADFRAFLLAKALNGEQAAGHARQFHAMATRTRQQYLQ 540 550 560 570 580 590 440 450 460 mKIAA1 AIIQNHREVMTFEDFAAQVFSPSPSYSVSGTD . :. . .. : :.. :: mKIAA4 DLATNEVTTTSL-DSASRFGLPSLGGRRRATPRSPGAELQAAGALMWGVRAAPGARVAAG 600 610 620 630 640 650 >>mKIAA1219 ( 1172 res) mbg01754 (1172 aa) initn: 184 init1: 73 opt: 148 Z-score: 158.5 bits: 40.0 E(): 0.0011 Smith-Waterman score: 181; 22.297% identity (25.483% ungapped) in 296 aa overlap (19-296:621-897) 10 20 30 40 mKIAA1 DNAHVEGTELSSEVFRSPNLQLFVFNDSTLISYLQTPAEGPAGGTSGG ... ::...:.....: : : :. .. mKIAA1 PSPSGPASPCSLVNETTLIKYSRLPTINKHSFRYFVLDNSVILAML----EQPLGNEQND 600 610 620 630 640 50 60 70 80 90 100 mKIAA1 SLSDVRVIVRDISGKYSWDGKVLYGPLEGRLAPNGRNPSFQISGWHHHTCGPQKDL-FNG . .: :.:: .::. .: .. : : : . . .. . . :..:. :. mKIAA1 FFPSVTVLVRGMSGRLAWAQQLC-------LLPRGAKANQKLFVPEPRPV-PKNDVGFKY 650 660 670 680 690 110 120 130 140 150 160 mKIAA1 EEGDDVLDKLLENIGHTSPECLLPS--QLNLNEPSPTPCAMNWDQEKAI-MEVILRQSAQ . . ...: .. . .:. .. .: . . . : .:. :.:.. mKIAA1 SVKHRPFPEEVDKIPFVKADLSIPDLHEIVTEELEERHEKLRSGMAQQIAYEMHLEQQS- 700 710 720 730 740 750 170 180 190 200 210 mKIAA1 EDEYVQRCNSDSSVTVTSQGQPSPVEPRGPFYFCRLLLDDLGMNSWDRRKN-------FH : : .: : ... .: : : : ::.:. .:. : . :. : mKIAA1 EGELQKRSFPDP----VTDCKPPP--PAQEFQTARLFLSHFGFLSLEALKEPANSRLPPH 760 770 780 790 800 810 220 230 240 250 260 270 mKIAA1 LLKKNSKL---LRELKNLDSRQCRETHKIAVFYIAEGQEDKCSILANERGSQAYE----D :. .: . . .. :: :: . .::. ::. . :: : ..:. . . mKIAA1 LIALDSTIPGFFDDIGYLDLLPCRPFDTVFIFYMKPGQKTNQEILKNVESSRNVQPHFLE 820 830 840 850 860 870 280 290 300 310 320 330 mKIAA1 FVAGLGWEVDLSTHCGFMGGLQRNGSTGQTAPYYATSTVEVIFHVSTRMPSVSDDSLTKK :. .::: ::.. : :. : .. . : mKIAA1 FLLSLGWSVDVGKHPGWTGHVSTSWSINSCDDGEGSEPDEITSSEDVGASIFNGQKKVLY 880 890 900 910 920 930 467 residues in 1 query sequences 1768550 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:39:46 2006 done: Mon Mar 27 10:39:47 2006 Scan time: 0.680 Display time: 0.100 Function used was FASTA [version 3.4t11 Apr 17, 2002]