FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4040.ptfa, 1035 aa vs ./tmplib.26680 library 1767982 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4425+/-0.00445; mu= 19.2379+/- 0.299 mean_var=89.0153+/-20.013, 0's: 0 Z-trim: 9 B-trim: 29 in 1/35 Lambda= 0.1359 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0277 ( 584 res) mbg05659 ( 584) 1565 318 3.2e-87 mKIAA4052 ( 1046 res) mbg11557 (1046) 589 127 1.9e-29 mKIAA0313 ( 1138 res) mbg03233 (1138) 581 125 5.8e-29 mKIAA0351 ( 537 res) mbg14564 ( 537) 259 61 3.8e-10 mKIAA4200 ( 414 res) mie24089 ( 414) 227 55 2.5e-08 mKIAA0846 ( 693 res) mfj18276 ( 693) 224 55 5.2e-08 mKIAA1415 ( 1665 res) mib23074 (1665) 220 54 1.5e-07 mKIAA1308 ( 924 res) mbh02485 ( 924) 172 45 7.2e-05 >>mKIAA0277 ( 584 res) mbg05659 (584 aa) initn: 1482 init1: 977 opt: 1565 Z-score: 1658.4 bits: 317.6 E(): 3.2e-87 Smith-Waterman score: 1565; 46.080% identity (46.887% ungapped) in 523 aa overlap (515-1033:66-583) 490 500 510 520 530 540 mKIAA4 EANTVRLKEHDQDVLVLEKVPAGNRAANQGNSQPQQKYTVMSGTPEKILEHFLETIRLEP .: ...:.:.::::::::::.:. ..: mKIAA0 DVPYFKYIDEEDEDDEWSSRSQSSTEDDSVDSLLSDRYVVVSGTPEKILEHLLNDLHLAE 40 50 60 70 80 90 550 560 570 580 590 600 mKIAA4 SLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIRL .. :...:.::.. . ::: . .:: ::. :: :. :: :.: : ::.:..: mKIAA0 VQHKETETLLDDFLLTYTVFMTTDDLCQALLRHYSAKKYQG-EEENSDVPCR-KRKVLHL 100 110 120 130 140 150 610 620 630 640 650 660 mKIAA4 VLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIV---KQISEDA : :: ..: : :.::. . ::. .: .: ::. . ....: :..::. .. . : mKIAA0 VSQWISLYKDWLHEDEHSKMFLKTIYRNVLDDVYEYPILEKELKEFQKILGVYRRHTVDE 160 170 180 190 200 210 670 680 690 700 710 720 mKIAA4 KAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVIS .::::.:.:..::. .. :.: . ..:.. .:: .:.: .... :.....:... mKIAA0 YSPQKKNKALFHQFSLKENWLQHRGTVAETEEIFCHVYITEHSYISVKAKVSSTAQEILK 220 230 240 250 260 270 730 740 750 760 770 780 mKIAA4 AVADKLGSGE-GLIIVKMNSGGEKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPE .::.:: .: : .: .. .::: .. ::... .: .::... .. :.:.:: : mKIAA0 VVAEKLQRAEEDLALVAITFSGEKHEFQPNDLAISKSLEASGRIYVYRKDLADTLNPLAE 280 290 300 310 320 330 790 800 810 820 830 840 mKIAA4 QEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLF .: .. . :.. ::: .. ..:: ::: .:: :::: ::.:.. ..:.::.:. mKIAA0 NEESQQRSMRILG-MNTWDLALELMSFDWSLFNSIHEQELIYFTFSRQGNGENTVNLSLL 340 350 360 370 380 390 850 860 870 880 890 900 mKIAA4 LRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVS :.: ::.:.::.::. :::::.:::::.::::::::::: .::::::::::::....:: mKIAA0 LQRCNEVQLWVATEILLCSQLGKRVQLVKKFIKIAAHCKAQQNLNSFFAIVMGLNTASVS 400 410 420 430 440 450 910 920 930 940 950 960 mKIAA4 RLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHE ::. ::::.:.::::...:.::: ::: ::.::: . :..:: :::::::.::.:: :: mKIAA0 RLSQTWEKIPGKFKKLFSELESLTDPSLNHKAYRDAFKKMKPPKIPFMPLLLKDVTFIHE 460 470 480 490 500 510 970 980 990 1000 1010 1020 mKIAA4 GNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQ :::::.::::::::..:::.:.::.:. :.. :. :.. :..:...::: .: :::.: mKIAA0 GNKTFLDNLVNFEKLHMIADTVRTLRHCRTNQFGSDVSP--KEQQELKSYVNHLYVIDSQ 520 530 540 550 560 570 1030 mKIAA4 RTLSQMSHRLEPRRP ..: ..::::::: mKIAA0 QALFELSHRLEPRA 580 >>mKIAA4052 ( 1046 res) mbg11557 (1046 aa) initn: 545 init1: 305 opt: 589 Z-score: 621.2 bits: 126.6 E(): 1.9e-29 Smith-Waterman score: 589; 32.394% identity (33.923% ungapped) in 355 aa overlap (692-1034:286-636) 670 680 690 700 710 720 mKIAA4 KAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVIS :.:. .:. :. : . ...:::. mKIAA4 PIPGTLSSSSPDLLQPTTSMLDFSNPSDIPDQVI-RVFKADQQSCYIIISKDTTAKEVVC 260 270 280 290 300 310 730 740 750 760 770 mKIAA4 AVADKLG---SGEGLIIVKMNSGGEKVVLKSNDVSVFTTLT----INGRLFACPREQFDS .....: ... . ... : :. . . :. :. .::: . . .. mKIAA4 QAVQEFGLTGASDTYSLCEVSVTPEGVIKQRRLPDQFSKLADRIQLNGRYYLKNNMETET 320 330 340 350 360 370 780 790 800 810 820 830 mKIAA4 L-TPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKT : . :: . .. ..: :. ..: :.. :..:: .. : : : . . : mKIAA4 LCSDEDAQELLKESQLSMLQL-STIEVATQLSMRDFDLFRNIEPTEYIDDLF-KLDSKTG 380 390 400 410 420 430 840 850 860 870 880 890 mKIAA4 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG ...: : :. :::..:. :. ::....:.::::: ::.: ::.::.:::. : mKIAA4 NTHLKQFEDIVNQETFWVASEILSESNQLKRMKIIKHFIKIALHCRECKNFNSMFAIISG 440 450 460 470 480 490 900 910 920 930 940 950 mKIAA4 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYR--LTAAKLEPPLIPFMPLL :. . :.:: ::::::::..: ....:.::::: :: :.. ...::.::..:.. mKIAA4 LNLAPVARLRGTWEKLPSKYEKHLQDLQDLFDPSRNMAKYRNILSSQSMQPPIIPLFPVV 500 510 520 530 540 550 960 970 980 990 1000 1010 mKIAA4 IKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSY- ::::: :::: . .:.::::::.::::. : . . : ..: : . . .. :: mKIAA4 KKDMTFLHEGNDSKVDGLVNFEKLRMIAKEIRHIIRMTSANMDP-AMMFRQRKKRWRSLG 560 570 580 590 600 610 1020 1030 mKIAA4 -VRQLNVIDNQRTLSQMSHRLEPRRP . : .. .:. .. .:. . :: mKIAA4 SLSQGSTNSNMLDVQGGAHKKRARRSSLLNAKKLYEDAQMARKVKQYLSSLDIDTDEEKF 620 630 640 650 660 670 >>mKIAA0313 ( 1138 res) mbg03233 (1138 aa) initn: 532 init1: 333 opt: 581 Z-score: 612.3 bits: 125.0 E(): 5.8e-29 Smith-Waterman score: 581; 34.713% identity (36.213% ungapped) in 314 aa overlap (692-995:249-559) 670 680 690 700 710 720 mKIAA4 KAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEV-I :.:: .:. :. : . ...::: : mKIAA0 PVSGTLSSSNPDLLQSHHRILDFSTTPDLPDQVL-RVFKADQQSRYIMISKDTTAKEVVI 220 230 240 250 260 270 730 740 750 760 770 mKIAA4 SAVAD--KLGSGEGLIIVKMNSGGEKVV----LKSNDVSVFTTLTINGRLFACPREQFDS .:. . .. : . ... : :. : .. .. . ..:: . . .. mKIAA0 QAIREFAVTATPEQYSLCEVSVTPEGVIKQRRLPDQLSKLADRIQLSGRYYLKNNMETET 280 290 300 310 320 330 780 790 800 810 820 830 mKIAA4 L-TPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKT : . :: . .. ..: :. ..: :.. ..::: .. : : : . . : . mKIAA0 LCSDEDAQELLRESQISLLQL-STVEVATQLSMRNFELFRNIEPTEYIDDLF-KLKSKTS 340 350 360 370 380 390 840 850 860 870 880 890 mKIAA4 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG ::: : . .:. :::..:. .. ::....:.::::: ::.: ::.::.:::. : mKIAA0 CANLKKFEEVINQETFWVASEILRETNQLKRMKIIKHFIKIALHCRECKNFNSMFAIISG 400 410 420 430 440 450 900 910 920 930 940 950 mKIAA4 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYR--LTAAKLEPPLIPFMPLL :. . :.:: ::::::.:..:.. ....:.::::: :: :.. .:.::.::..:.. mKIAA0 LNLAPVARLRTTWEKLPNKYEKLFQDLQDLFDPSRNMAKYRNVLSGQNLQPPVIPLFPVI 460 470 480 490 500 510 960 970 980 990 1000 1010 mKIAA4 IKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYV ::.:: :::: . .:.::::::.::::. : : . : ..: mKIAA0 KKDLTFLHEGNDSKVDGLVNFEKLRMIAKEIRHVGRMASVNMDPALMFRTRKKKWRSLGS 520 530 540 550 560 570 1020 1030 mKIAA4 RQLNVIDNQRTLSQMSHRLEPRRP mKIAA0 LSQGSANATVLDVAQTGGHKKRVRRSSFLNAKKLYEDAQMARKVKQYLSNLELEMDEESL 580 590 600 610 620 630 >>mKIAA0351 ( 537 res) mbg14564 (537 aa) initn: 248 init1: 219 opt: 259 Z-score: 274.5 bits: 61.5 E(): 3.8e-10 Smith-Waterman score: 259; 25.926% identity (27.876% ungapped) in 243 aa overlap (802-1032:74-311) 780 790 800 810 820 mKIAA4 FDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVH----EL-ELIYHTFG : .:: .:. .. :. :: .. mKIAA0 RNGLMASVLVTSATPQGSSSSDSLEGQSCDYASKSYDAVVFDVLKVTPEEFAELASCGWS 50 60 70 80 90 100 830 840 850 860 870 880 mKIAA4 RHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNS ... .. . :. : ::::...:::: :. . :. :...:..:.::: . : .::.: mKIAA0 KKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHS 110 120 130 140 150 160 890 900 910 920 930 940 mKIAA4 FFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYR--LTAAKLEPPL ....: .:... . ::. :: : : : . ... ::. :.. : . . :. : mKIAA0 LMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTRDYIRSLKMVPS- 170 180 190 200 210 220 950 960 970 980 990 1000 mKIAA4 IPFMPLLIKDMTF---THEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN ::.. . . :. . .. .. ....: ..: : .. : ... mKIAA0 IPYLGIYLLDLIYIDSAYPASGSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQ 230 240 250 260 270 280 1010 1020 1030 mKIAA4 KNHQDVRSYVRQLN--VIDNQRTLSQMSHRLEPRRP : ..:: :...:. : :.. :: :.:: mKIAA0 KYLKSVR-YIEELQKFVEDDNYKLSL---RIEPGSSSPRLVSSKEDLAGPSAGSSSARFR 290 300 310 320 330 mKIAA0 RRPTCPDTSVAGSLPTPPVPRHRKSHSLGNKGRLYATLGPNWRVPVRNSPRTRSCVYSPT 340 350 360 370 380 390 >>mKIAA4200 ( 414 res) mie24089 (414 aa) initn: 193 init1: 167 opt: 227 Z-score: 241.8 bits: 55.0 E(): 2.5e-08 Smith-Waterman score: 227; 37.634% identity (39.326% ungapped) in 93 aa overlap (226-317:37-126) 200 210 220 230 240 250 mKIAA4 DRIPDKENTPLIEPHVPLRPAHTITKVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKT ..: .:. ::. . . ..:.::..:::: mKIAA4 EEGSSGGSGSSDSNAGGSGGVQQRELERMAEVLVTGEQLRLRL--HEEKVIKDRRHHLKT 10 20 30 40 50 60 260 270 280 290 300 310 mKIAA4 YRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHV-DQERHFQDKYLFYRFL : .: :. ::.::.:.. . .: :. . : : . :...:: :....:.: ::::: mKIAA4 YPNCFVAKELIDWLIEHKE-ASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFR 70 80 90 100 110 120 320 330 340 350 360 370 mKIAA4 DDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKPPGQRTVDDLEIIYDE :. mKIAA4 KDDGTFALDSEVKAFMRGQRLYEKLMSPETTLLQPREEEGVKYERTFMASEFLDWLVQEG 130 140 150 160 170 180 >>mKIAA0846 ( 693 res) mfj18276 (693 aa) initn: 220 init1: 192 opt: 224 Z-score: 236.2 bits: 54.7 E(): 5.2e-08 Smith-Waterman score: 224; 23.868% identity (24.681% ungapped) in 243 aa overlap (792-1033:150-385) 770 780 790 800 810 820 mKIAA4 GRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELI :. . .:: ..: . . : . . mKIAA0 MDISSVPSYDWMRRVTQRKKVSKRGKACLLFDHLEPIELAEHLTFLEHKSFRRISFTD-- 120 130 140 150 160 170 830 840 850 860 870 880 mKIAA4 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY :... :. ... .:. . :: :. :: : . ..:.... :::..: . . mKIAA0 YQSYVIHGCLENNPTLERSIALFNGISKWVQLMVLSKPSAQQRAEVITKFINVAQKLLQL 180 190 200 210 220 230 890 900 910 920 930 940 mKIAA4 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLE ::.:...:.: :::. ..::: : .: :. : . :. :.. . :. :: . : . mKIAA0 KNFNTLMAVVGGLSHSSISRLKDTHSHLSSEVTKNWNEMTELVSSNGNYCNYRKAFADCD 240 250 260 270 280 290 950 960 970 980 990 1000 mKIAA4 PPLIPFMPLLIKDMTFTHEGNKTFID-NLVNFEKMRMIANTARTVRYYRSQPFNPDAAQA ::.. . .::. .: ... : :: ::.... : . .. . . mKIAA0 GFKIPILGVHLKDLIAVHVIFPDWMEENKVNVVKMHQLSVTLSELVSLQNA-----SHHL 300 310 320 330 340 350 1010 1020 1030 mKIAA4 NKNHQDVRSYVRQLNVIDNQRTLSQMSHRLEPRRP . : . . . .:.. .. . ..: :::: mKIAA0 EPNMDLINLLTLSLDLYHTEDDIYKLSLVLEPRNSKSQPTSPTTPNKPVVPLEWASEVVP 360 370 380 390 400 410 mKIAA0 KPDPTIINKHIRKLVESVFRNYDHDHDGYISQEDFESIAANFPFLDSFCVLDKDQDGLIS 420 430 440 450 460 470 >>mKIAA1415 ( 1665 res) mib23074 (1665 aa) initn: 222 init1: 120 opt: 220 Z-score: 227.9 bits: 54.5 E(): 1.5e-07 Smith-Waterman score: 220; 30.645% identity (31.148% ungapped) in 124 aa overlap (225-348:518-639) 200 210 220 230 240 250 mKIAA4 NDRIPDKENTPLIEPHVPLRPAHTITKVPSEKILRAGKILRIAILSRAPHMIRDRKYHLK : :. : : . : .:.:: :::: mKIAA1 HVSDKHQFKNEQVMYRFRYDDGTYKARSELEDIMSKGVRLYCRLHSLYAPVIKDRDYHLK 490 500 510 520 530 540 260 270 280 290 300 310 mKIAA4 TYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFL ::.. :..::::.. : .: ..: .::.. : ..: ..:: .. .:.:. ..:: mKIAA1 TYKSVVPGSKLVDWLLAQGDC-QTREEAVALGVGLCNNGFMHHVLEKSEFKDESQYFRFH 550 560 570 580 590 600 320 330 340 350 360 370 mKIAA4 DDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKPPGQRTVDDLEIIYDE ::. .. ..... . : .: ...: . : mKIAA1 ADEEMEGT-SSKNKQLRNDFKLVENILAKRLLIPPQEDDYGFDLEEKNKAVVVKSVQRGS 610 620 630 640 650 660 380 390 400 410 420 430 mKIAA4 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG mKIAA1 LAEMAGLQAGRKIYSINEDLVFLRPFSEVETILNQFFCSRRPLRLLVATKAKETIKVPDH 670 680 690 700 710 720 >>mKIAA1308 ( 924 res) mbh02485 (924 aa) initn: 151 init1: 81 opt: 172 Z-score: 179.8 bits: 44.7 E(): 7.2e-05 Smith-Waterman score: 194; 23.810% identity (28.139% ungapped) in 273 aa overlap (794-1032:393-657) 770 780 790 800 810 mKIAA4 LFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDL-AYQMTTYDWELFNCV---HELE :. :: : :.: .: :::. : : : mKIAA1 ESAPVPTPALEPSWSLPEATENGLTEKPHLLLFPPDLVAEQFTLMDAELFKKVVPYHCLG 370 380 390 400 410 420 820 830 840 850 860 870 mKIAA4 LIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSK---RVQLLKKFIKIAA :. ... .. . .. . .::.. :.: .:: .: : :.......:..: mKIAA1 SIWSQRDKKGKEHLAPTIRATVAQFNNVANCVIT-TCLGDQSMKAPDRARVVEHWIEVAR 430 440 450 460 470 480 880 890 900 910 mKIAA4 HCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLP-SKFKKFY------------------ .:. ::..:..::. .:.. :. :: :::.. ..:. : mKIAA1 ECRALKNFSSLYAILSALQSNAIHRLKKTWEEVSRDSFRVFQKLSEIFSDENNYSLSREL 490 500 510 520 530 540 920 930 940 950 960 mKIAA4 ------AEFESL-MDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFI-DNL ..: .: :.: : .: . :.. .:.. .. :... . : .. : mKIAA1 LIKEGTSKFATLEMNPRRAQRRQKETGVI--QGTVPYLGTFLTDLVMLDTAMKDYLYGRL 550 560 570 580 590 970 980 990 1000 1010 1020 mKIAA4 VNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRTLSQMSHR .:::: : .. .. .: : . : ..: .. : .. ... .. . .: . mKIAA1 INFEKRRKEFEVIAQIKLLQSACNNYSIAP--EEH--FGTWFRAMERLSEAESYT-LSCE 600 610 620 630 640 650 1030 mKIAA4 LEPRRP ::: mKIAA1 LEPPSESASNTLRSKKSTAIVKRWSDRQAPSTELSTSSSAHSKSCDQLRCSPYLGSGDIT 660 670 680 690 700 710 1035 residues in 1 query sequences 1767982 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:59:57 2006 done: Mon Mar 27 10:59:58 2006 Scan time: 1.050 Display time: 0.290 Function used was FASTA [version 3.4t11 Apr 17, 2002]