FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0210.ptfa, 821 aa vs ./tmplib.26680 library 1768196 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.9472+/-0.00675; mu= -3.0746+/- 0.446 mean_var=270.0118+/-66.393, 0's: 0 Z-trim: 15 B-trim: 0 in 0/36 Lambda= 0.0781 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0192 ( 1146 res) msp04171 (1146) 238 41 0.0011 mKIAA0292 ( 1725 res) mbg10230 (1725) 221 39 0.0056 mKIAA4228 ( 1123 res) mfj21276 (1123) 212 38 0.0084 >>mKIAA0192 ( 1146 res) msp04171 (1146 aa) initn: 1087 init1: 205 opt: 238 Z-score: 158.4 bits: 40.7 E(): 0.0011 Smith-Waterman score: 246; 24.771% identity (27.551% ungapped) in 218 aa overlap (426-631:926-1133) 400 410 420 430 440 450 mKIAA0 GLLMHYPIIGDIHSLILKALFLRDPKRNPRPATYQFHPNLDYYKARGADLMNKSR---TN : .:. .: . . . . :.. .: mKIAA0 SYGLQTSQGYTSYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQR 900 910 920 930 940 950 460 470 480 490 500 mKIAA0 ARG-----APLNIHKVSNSLINFGRKLISPASAPGSMGG-PVPGNNSSSSFSAAIPTRTS : :: : .... :... .. . :.: . : ... .. .: . . mKIAA0 PSGYVHQQAPTYGHGLTSTQ-RFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQ 960 970 980 990 1000 1010 510 520 530 540 550 560 mKIAA0 TEAPRHHLLQQQQQQQHQQQQQQQPQQQQQQH--QQQQQQQRLMKSESMPVQLNKGQSSK . ... :::::::.::::::: ::::: : ::::::: : ..... : .. :... mKIAA0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHIRQQQQQQQMLRQQQQQQQQQQQQQQQQ 1020 1030 1040 1050 1060 1070 570 580 590 600 610 620 mKIAA0 TISSSPSIESLPGGREFTGSPP-PSATKKDSFFSNIARSRSHSKTMGRKESEEELEAQIS ... . .. : .. ..:: :. .. .: . . . . ..... : . mKIAA0 QQQQQQQQQQQPHQQQQQAAPPQPQPQSQPQF---------QRQGLQQTQQQQQTAALVR 1080 1090 1100 1110 1120 630 640 650 660 670 680 mKIAA0 FLQGQLNDLDAMCKYCAKVMDMHLVNIQDVVLQENLEKEDQILVSLAGLKQIKDILKGSL :: ::.. mKIAA0 QLQQQLSNTQPQPSTNIFGRY 1130 1140 >>mKIAA0292 ( 1725 res) mbg10230 (1725 aa) initn: 283 init1: 169 opt: 221 Z-score: 145.8 bits: 39.0 E(): 0.0056 Smith-Waterman score: 221; 25.876% identity (30.000% ungapped) in 371 aa overlap (471-817:24-367) 450 460 470 480 490 mKIAA0 RGADLMNKSRTNARGAPLNIHKVSNSLINFGRKLISPASAPGSMGGPVPGNNSSSSF-SA :... : :.: :.... .: ..: .: mKIAA0 QRFSQSGQSYDGSYSVNAGSQYEGHNVGSNAQAYGTQSNYSYQPQSMKNFEQA 10 20 30 40 50 500 510 520 530 540 550 mKIAA0 AIPTRTSTEAPRHHLLQQQQQQQHQQQQQQQPQQQQQQHQQQQQQQRLMK----SESMPV :: : .. ::::::: : :::: ::::::.:::. :..:. . .::. mKIAA0 KIP-------PGNQQGQQQQQQQPQPQQQQPQQQQQQQQQQQHPPQHVMQYTNAATKMPL 60 70 80 90 100 560 570 580 590 600 610 mKIAA0 QLNKGQSSKTISSSPSIESLPGGREFT--GSPPPSAT--KKDSFFSNIARSRSHSKTMGR : . :: .. : . ..:. ..: :.:. .. : :. . . .... mKIAA0 QSQVGQYNQP--EVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQSGENLQC 110 120 130 140 150 160 620 630 640 650 660 mKIAA0 KESEEELEAQISFLQ--GQLNDLDAMCKYCAKVMDMHLVNIQDVVLQENLEKE--DQILV ... . .. .:: ::. .: . : .... :. ::. : : mKIAA0 GQGNVPMSSRNRILQLMPQLSPTPSM----MPSPNSHAAGFKGFGLEGVPEKRLTDPGLS 170 180 190 200 210 220 670 680 690 700 710 mKIAA0 SLAGLKQ--------IKDILKGSLRFNQSQLEAGENEQITIADDHYCSSGQDQGSQVPRA ::..:.. .. .: .. :.. . . ::. :.... ::. :. mKIAA0 SLSALSSQVANLPNTVQHMLLSDALTPQKKTSKRPSSSSKKADS--CTNSE--GSSQPE- 230 240 250 260 270 720 730 740 750 760 770 mKIAA0 AKQASSEMP-GCTGGTTPDDFILVSKEDEGHRARGAFSGQAQPLLTLRSTSGKSRAPACS .: .: : . :: . :.::.:.:.: .:::. : . : :. . : mKIAA0 -EQLKSPMAESLDGGCSS------SSEDQGERVR-QLSGQSTSSDTTYKC-GASEKAGSS 280 290 300 310 320 780 790 800 810 820 mKIAA0 PLLFSDPLMGPASASASSSNPSSSP--DDDSSKESGFTIVSPLDI : .. :.: .. . ..:: : : . : : :. mKIAA0 PTQGAQNEAPRLSTSPATRDEAASPGAKDTSLSSEGNTKVNEKTVGVIVSREAMTGRVEK 330 340 350 360 370 380 mKIAA0 SGGQDKGSQEDDPAASQRPPSNSGVKEISHTSLPQPDPPGGGSKGNKNGDNNSSNHNGEG 390 400 410 420 430 440 >>mKIAA4228 ( 1123 res) mfj21276 (1123 aa) initn: 192 init1: 192 opt: 212 Z-score: 142.6 bits: 37.8 E(): 0.0084 Smith-Waterman score: 232; 27.596% identity (32.686% ungapped) in 366 aa overlap (476-811:746-1084) 450 460 470 480 490 500 mKIAA0 MNKSRTNARGAPLNIHKVSNSLINFGRKLISPASAPGSMGGPVPGNNSSSSFSAAIPTRT ::: . . :: ::. .. . . mKIAA4 FSPYYAPQIPGALQSGYLQPMYGMEGLFPYSPALSQALMGLS-PGSLLQQYQQYQQSLQE 720 730 740 750 760 770 510 520 530 540 550 560 mKIAA0 STEAPRHHLLQQQQQQQHQQQQ-QQQPQQQQQQHQQQQQQQRLMKSESMPVQLNKGQSSK . . ... :::::::.::.: ::: :::::. :::::::. :. . :: . .. .: mKIAA4 AIQQQQQQQQQQQQQQQQQQRQLQQQQQQQQQKVQQQQQQQQQPKASQTPVPQGPASPDK 780 790 800 810 820 830 570 580 590 600 610 mKIAA0 T-ISSSPSIE---SLPGGREFTG---SPP--PSATKK----DSFFSNIARSRSHSKTMGR . ::. : ..: :: . .:: : : .: ::. . . . . : . : mKIAA4 DPAKESPKPEEQKNVP--REVSPLLPKPPEEPEAESKSASADSLCDPFIVPKVQYKLVCR 840 850 860 870 880 890 620 630 640 650 660 670 mKIAA0 KESEEELEAQISFLQGQLNDLDAMCKYCAKVMDMHLVNIQDVVLQENLEKEDQILVSLAG : .: .. .. . : ..: . .: ::.:..::. : .: mKIAA4 K-----CQAGFGDEEAARSHLKSLCCFGQSV-----VNLQEMVLHVPTG-------SGGG 900 910 920 930 680 690 700 710 720 mKIAA0 LKQIKDILKGSLRFNQSQLEA---GENEQITIADDHYCSSGQDQGSQVPRAAKQASSEMP :. .. :. ::. : ... :. . . :::..:. : : mKIAA4 GGGGGGSGGGGGSYHCLACESALCGEE-----ALSQHLESALHKHRTITRAARNAK-EHP 940 950 960 970 980 730 740 750 760 770 mKIAA0 GCTGGTT--PDDFILVSKEDEGHRA------RGAFSGQAQPLLTLRS-TSGKSRAPACSP . .. :: .... .: .: :..:.: . .: ::: : .: mKIAA4 SLLPHSACFPDPSTASTSQSAAHSNDSPPPPSAAPSSSASPHASRKSWPPVGSRASAAKP 990 1000 1010 1020 1030 1040 780 790 800 810 820 mKIAA0 LLFSDPLMGPASASASSSNPS----SSPDDDSSKESGFTIVSPLDI : :: . .....:: . : : : :: :.:: mKIAA4 PSFP-PLSSSSTVTSSSCSTSGVQPSMPTDDYSEESDTDLSQKSDGPASPVEGPKDPSCP 1050 1060 1070 1080 1090 1100 mKIAA4 KDSGLTSVGTDTFRL 1110 1120 821 residues in 1 query sequences 1768196 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:14:42 2006 done: Mon Mar 27 10:14:43 2006 Scan time: 0.890 Display time: 0.120 Function used was FASTA [version 3.4t11 Apr 17, 2002]