FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4001.ptfa, 379 aa
 vs ./tmplib.26680 library

1768638 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.4370+/-0.00804; mu= -7.0770+/- 0.533
 mean_var=305.2189+/-73.811, 0's: 0 Z-trim: 2  B-trim: 79 in 1/35
 Lambda= 0.0734

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0021  ( 853 res)   mbh01716                   ( 853)  734   91 3.1e-19


>>mKIAA0021  ( 853 res)   mbh01716                        (853 aa)
 initn: 682 init1: 258 opt: 734  Z-score: 437.7  bits: 90.9 E(): 3.1e-19
Smith-Waterman score: 734;  39.650% identity (43.175% ungapped) in 343 aa overlap (1-335:526-848)

                                             10        20        30
mKIAA4                               QTHEQQCVTLWGPGAKPAPGICFERVNSAG
                                     : .. :: ...:  :: ::  :: .::: :
mKIAA0 GSSQFCPPDVFIQNGYPCQNSKAYCYNGMCQYYDAQCQVIFGSKAKAAPRDCFIEVNSKG
         500       510       520       530       540       550     

               40        50        60        70        80        90
mKIAA4 DPYGNCGKDSKSAFAKCELRDAKCGKIQCQGGASRPVIGTNAVSIETNIPQQEGGRILCR
       : .::::  : : . ::   .: :::.::..  . ::.:   . :.:  :.. : .  : 
mKIAA0 DRFGNCGF-SGSEYKKCATGNALCGKLQCENVQDMPVFGIVPAIIQT--PSR-GTK--CW
         560        570       580       590       600              

              100       110       120       130         140        
mKIAA4 GTHVYLGDDMPDPGLVLAGTKCAEGKICLNRRCQNISVFGVHKCAMQ--CHGRGVCNNRK
       :.   ::.:.::::.:  ::::  :::: : .: : ::.. . : .:  :::.::::. :
mKIAA0 GVDFQLGSDVPDPGMVNEGTKCDAGKICRNFQCVNASVLN-YDCDIQGKCHGHGVCNSNK
     610       620       630       640        650       660        

      150       160       170       180       190          200     
mKIAA4 NCHCEAHWAPPFCDKFGFGGSTDSGPIRQADNQGLTVGILVS---ILCLLAAGFVVYLKR
       :::::  :::: ::  :.:::.::::  .: . .:  :.::    :. :.::.. ...::
mKIAA0 NCHCEDGWAPPHCDTKGYGGSVDSGPTYNAKSTALRDGLLVFFFLIVPLVAAAIFLFIKR
      670       680       690       700       710       720        

         210       220        230       240       250       260    
mKIAA4 KTLMRLLFTHKKTTMEKLRC-VHPSRTPSGPHLGQAHHTPGKGLLMNRAPHFNTPKDRHS
         : :  : .:.. :   :  .. :: :. : ...    :: :  ..: :  . :    :
mKIAA0 DEL-RKTFRKKRSQMSDGRNQANVSRQPGDPSISRP---PG-GPNVSRPP--GGPGV--S
      730        740       750       760           770             

          270       280         290       300       310       320  
mKIAA4 LKCQNMDISRPLDARAV--PQLQSPQRVLLPLHQTPRAPSGPARPLPASPAVRQAQGIRK
           .  .:::  . .:  :     .:  .: . . .  . :.:: : .: . ..::   
mKIAA0 RPPGGPGVSRPPGGPGVSRPPPGHGNRFPVPTYAAKQPAQFPSRPPPPQPKI-SSQGNLI
     780       790       800       810       820       830         

            330       340       350       360       370         
mKIAA4 PSPPQKPLPADPLSRTSRLTSALVRTPGQQEPGHRPAPIRPAPKHQVPRPSHNAYIK
       :.   .: :: ::                                            
mKIAA0 PA---RPAPAPPLYSSLT                                       
      840          850                                          




379 residues in 1 query   sequences
1768638 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:58:58 2006 done: Mon Mar 27 10:58:58 2006
 Scan time:  0.570 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]