FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA2000.ptfa, 1263 aa vs ./tmplib.26680 library 1767754 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.9677+/-0.00533; mu= 12.3745+/- 0.355 mean_var=134.9106+/-31.189, 0's: 0 Z-trim: 7 B-trim: 0 in 0/36 Lambda= 0.1104 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0664 ( 1237 res) mbg01465 (1237) 245 52 9.3e-07 mKIAA0228 ( 557 res) mbg08794 ( 557) 185 42 0.00041 mKIAA1785 ( 617 res) mph01357 ( 617) 177 41 0.0011 >>mKIAA0664 ( 1237 res) mbg01465 (1237 aa) initn: 278 init1: 186 opt: 245 Z-score: 213.7 bits: 51.7 E(): 9.3e-07 Smith-Waterman score: 245; 24.161% identity (25.175% ungapped) in 298 aa overlap (947-1240:865-1154) 920 930 940 950 960 970 mKIAA2 VAQSLHQLAGVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARE---LEALATLYHKQ ..: .. . : : : :. . .. : . mKIAA0 DSVDQAVETYGLQKITLLREISLKTGIQILLKEYSFDSRHKPAFTEEDVLNIFPVVKHVN 840 850 860 870 880 890 980 990 1000 1010 1020 1030 mKIAA2 NKYEQAEHFRKKSVIIRQQATRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELG : .: :: ... :: ..: : : .::.: . . : . : : :. mKIAA0 PKASDAFHFFQSG-----QAKVQQGFLKEGCELINEALNLFNNVYGAMHVEICACLRLLA 900 910 920 930 940 1040 1050 1060 1070 1080 1090 mKIAA2 VLYFLQNNLETAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYEKAEELYER :...... : . .... : :::.: .::. : .:: : ..: : : : mKIAA0 RLHYIMGDYAEALSNQQKAVLMSERVMGIEHPNTIQEYMHLALYCFASSQLSTALSLLYR 950 960 970 980 990 1000 1100 1110 1120 1130 1140 1150 mKIAA2 ALDIRRRALAPDHPSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSVAT : . ... ::: .: ...... . . . : .. . : :. . : ::: .:: mKIAA0 ARYLMLLVFGEDHPEMALLDNNIGLVLHGVMEYDLSLRFLENALAVTTKYHGPKALKVAL 1010 1020 1030 1040 1050 1060 1160 1170 1180 1190 1200 1210 mKIAA2 ALVNLAVLHSQMKKHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEEGNFEKA . .: .. . . :: ... ::. .::. : .. :. . : :. . .... mKIAA0 SHHLVARVYESKAEFRSALQHEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRT 1070 1080 1090 1100 1110 1120 1220 1230 1240 1250 1260 mKIAA2 A-ELYKRAMEIKEAETSLLGGKAPSRQSSSGDTFLFKTTHSPNVFLPQGQS :.:. . . :. : ::: : mKIAA0 MNEIYRNG---SSANIPPLKFTAPSMTSVLEQLNVINGILFIPLSQKDLENLKAEVARRH 1130 1140 1150 1160 1170 1180 >>mKIAA0228 ( 557 res) mbg08794 (557 aa) initn: 266 init1: 142 opt: 185 Z-score: 166.1 bits: 41.7 E(): 0.00041 Smith-Waterman score: 222; 25.490% identity (26.749% ungapped) in 255 aa overlap (876-1128:260-504) 850 860 870 880 890 900 mKIAA2 GKDKGAMATEYFESLKQYENSEGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEI .: : .: .. . :.:. : .:.: mKIAA0 VKREFKKAEQLIKHAVYLARDHFGSKHPKYSDTLLDYGFYLLNVDNICQSVAIYQAALDI 230 240 250 260 270 280 910 920 930 940 950 960 mKIAA2 RETALDPDHPRVAQSLHQLA-GVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARELE :.... . .:: . ..:: . ::. . : . .:: .: : : : : . mKIAA0 RQSVFGGKNIHVATAHEDLAYSSYVHQYSSGK----FDNALFHAERAIGII-THILPEDH 290 300 310 320 330 340 970 980 990 1000 1010 1020 mKIAA2 ALATLYHKQNKYEQAEHFRKKSVIIRQQATRRKGSLYGFALLRRRALQLEELTLGKDKPE : . ..: .: ... .. ... :... : :. .::: . ..:. . . mKIAA0 LLLA----SSKRVKALILEEIAIDCHNKETEQR-LLQEAHDLHLSSLQLAKKAFGEFNVQ 350 360 370 380 390 1030 1040 1050 1060 1070 1080 mKIAA2 NARTLNELGVLYFLQNNLETAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCN-EKKQ .:. ..:: :: . ... ::.. ......:..:: . . : :...::.: : . .: mKIAA0 TAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQ 400 410 420 430 440 450 1090 1100 1110 1120 1130 1140 mKIAA2 YEKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKS ::.::.:: :.. : .. .. . .: : . : ::.. :. .:. mKIAA0 YENAEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNWNRLR 460 470 480 490 500 510 1150 1160 1170 1180 1190 1200 mKIAA2 FGPKHPSVATALVNLAVLHSQMKKHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAVL mKIAA0 DRQYSVTDALEDVSSSPQSTEEVVQSFLMAQNVEGPSC 520 530 540 550 >>mKIAA1785 ( 617 res) mph01357 (617 aa) initn: 279 init1: 159 opt: 177 Z-score: 158.7 bits: 40.5 E(): 0.0011 Smith-Waterman score: 187; 25.490% identity (27.083% ungapped) in 153 aa overlap (1022-1165:241-393) 1000 1010 1020 1030 1040 1050 mKIAA2 QATRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVLYFLQN-NLETAEQFLK : : .:. ::. . .. .: : .. : mKIAA1 DGYGMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALELLGATFVDKKRDLLGALKYWK 220 230 240 250 260 270 1060 1070 1080 1090 1100 mKIAA2 RSLEMR--ER--VLGPDHPDCAQSLNNLAALCNEKKQYE----KAEELYERALDIRRRAL ....:: .: ... :. . : : .. : .:. .:: ::.: : mKIAA1 KAMNMRYSDRTNIISKPVPQTLIMAYDYAKEVNSAEELEGLIADPDEMRMQALLIRERIL 280 290 300 310 320 330 1110 1120 1130 1140 1150 1160 mKIAA2 APDHPSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLH .:.::. .: ... . .: .:. . . :.. :....:... : : .:..:...: : mKIAA1 GPSHPDTSYYIRYRGAVYADSGNFKRCINLWKYALDMQQSNLDPLSPMTASSLLSFAELF 340 350 360 370 380 390 1170 1180 1190 1200 1210 1220 mKIAA2 SQMKKHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEEGNFEKAAELYKRAME : : mKIAA1 SFMLQDRAKGLLGTTVTFDDLMGILCKSVLEIERAIKQTQCPADPLQLNKALSIILHLIC 400 410 420 430 440 450 1263 residues in 1 query sequences 1767754 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:57:26 2006 done: Mon Mar 27 10:57:28 2006 Scan time: 1.170 Display time: 0.120 Function used was FASTA [version 3.4t11 Apr 17, 2002]