FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1701.ptfa, 360 aa
 vs ./tmplib.26680 library

1768657 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.4947+/-0.00516; mu= 11.3693+/- 0.345
 mean_var=126.3587+/-29.818, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1141

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0443  ( 1350 res)   mbg01420                  (1350)  377   73 8.5e-14


>>mKIAA0443  ( 1350 res)   mbg01420                       (1350 aa)
 initn: 315 init1: 133 opt: 377  Z-score: 340.0  bits: 73.4 E(): 8.5e-14
Smith-Waterman score: 377;  28.296% identity (32.472% ungapped) in 311 aa overlap (67-359:852-1140)

         40        50        60        70        80        90      
mKIAA1 AEREAANANRGAGKSRDKGKGKAGSKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGT
                                     :.: :::.   ..::  :.. : .:. .. 
mKIAA0 SLEAVRRGTFESAPGIKEEKVTGSWFWTDKAKVGAGSQ---TVET--GSETEEEAIFESL
             830       840       850          860         870      

        100       110       120       130       140             150
mKIAA1 SDFNHRTENKFARSTRKDKPSSDNWFWAGEDSGINSWFWKGEELSNN------SVAKCEN
         .  . ..  :   : .::..:.      . ...::.:.... ...      : :. ::
mKIAA0 I-WAAKKDSIQAGVKRVSKPKDDG------NIAVGSWLWSSDKATKEAKTLIVSEASPEN
         880       890             900       910       920         

                160       170       180       190       200        
mKIAA1 KPSTSIQ--ARAEEPAPRTSHKSRSGAEEEEEENVIGNWFWEGDDTGFDTDPKPVFKIV-
          . ..  .::..     . .. .  .  : :...: ::::::...:...: :: : : 
mKIAA0 GKESVVKFGSRAKDELINKTGSGDNCKHSTEAETIVGAWFWEGDEASFESNPVPVCKAVC
     930       940       950       960       970       980         

       210          220       230           240       250       260
mKIAA1 KPQPVDEINEKD---RPKDWSEVTIWPKA-P---AVTPAVLGYRSQDSSEARSSSYIVLA
       .:.   : .: :   ::..:.:::.  :: :   :  : .  .:    .:: :    ...
mKIAA0 EPESSAE-HEPDPSRRPQSWDEVTVQFKAGPWGKAGFPPMNPFRFP--KEAASLFAEMFG
     990       1000      1010      1020      1030        1040      

              270       280       290       300       310       320
mKIAA1 SNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQQIKIREENGIKPFACPCKLE
       .. . . ..  .. .      :..::  ::  ... :::...: ::    . ..: : ..
mKIAA0 GKPKLVEVGPEREPE------PQFPFQYDPSYRSVREIREHLKARESAQPENWSCNC-IQ
       1050      1060            1070      1080      1090          

                330       340       350       360                  
mKIAA1 CYL--DSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFA                  
       : :   : :::.:. ..  . ::.::.:..::::.. .  :.                  
mKIAA0 CELRIGSEEFEELLLLMDRNRDPFIHEISKIAMGMRGASQFTRDFIRNSGVVSLIEALLN
    1100      1110      1120      1130      1140      1150         

mKIAA0 YPSSRVRTRFLENMVRMAPPYPDLNMIETYVCQICEDTFDYDLDSPDQLSGLTMITHLTA
    1160      1170      1180      1190      1200      1210         




360 residues in 1 query   sequences
1768657 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:51:14 2006 done: Mon Mar 27 10:51:14 2006
 Scan time:  0.590 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]