# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mic08012.fasta.nr -Q ../query/mKIAA1701.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1701, 360 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919460 sequences Expectation_n fit: rho(ln(x))= 5.3902+/-0.000187; mu= 9.2403+/- 0.010 mean_var=83.7085+/-16.199, 0's: 42 Z-trim: 48 B-trim: 12 in 1/64 Lambda= 0.140181 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148691893|gb|EDL23840.1| mCG114181, isoform CRA ( 550) 2406 496.3 6.4e-138 gi|81885538|sp|Q6PB60.1|BHLH9_MOUSE RecName: Full= ( 539) 2332 481.3 2e-133 gi|81864868|sp|Q71HP2.1|BHLH9_RAT RecName: Full=Pr ( 539) 2210 456.6 5.4e-126 gi|74749201|sp|Q6PI77.1|BHLH9_HUMAN RecName: Full= ( 547) 1528 318.7 1.8e-84 gi|75049243|sp|Q9BE11.1|BHLH9_MACFA RecName: Full= ( 547) 1517 316.5 8.4e-84 gi|109131640|ref|XP_001083873.1| PREDICTED: simila ( 547) 1516 316.3 9.7e-84 gi|74152360|dbj|BAE33934.1| unnamed protein produc ( 220) 1479 308.5 8.7e-82 gi|74008391|ref|XP_538118.2| PREDICTED: similar to ( 535) 1313 275.2 2.2e-71 gi|194680407|ref|XP_001788041.1| PREDICTED: simila ( 568) 1265 265.5 1.9e-68 gi|123218520|emb|CAM27377.1| basic helix-loop-heli ( 95) 583 127.0 1.6e-27 gi|114689537|ref|XP_521189.2| PREDICTED: hypotheti ( 838) 424 95.6 4e-17 gi|75041463|sp|Q5R7U0.1|GASP2_PONAB RecName: Full= ( 838) 423 95.4 4.6e-17 gi|109131636|ref|XP_001083657.1| PREDICTED: simila ( 838) 419 94.6 8.1e-17 gi|74751808|sp|Q96D09.1|GASP2_HUMAN RecName: Full= ( 838) 414 93.6 1.6e-16 gi|193784814|dbj|BAG53967.1| unnamed protein produ ( 838) 414 93.6 1.6e-16 gi|108884810|sp|Q8BUY8.2|GASP2_MOUSE RecName: Full ( 826) 402 91.1 8.7e-16 gi|149030791|gb|EDL85822.1| rCG20046 [Rattus norve (1346) 389 88.7 7.8e-15 gi|81871594|sp|Q920R4.1|GASP1_RAT RecName: Full=G- (1346) 389 88.7 7.8e-15 gi|27708188|ref|XP_228821.1| PREDICTED: similar to ( 836) 384 87.5 1.1e-14 gi|20071167|gb|AAH27187.1| Gprasp1 protein [Mus mu ( 874) 379 86.5 2.3e-14 gi|81883602|sp|Q5U4C1.1|GASP1_MOUSE RecName: Full= (1347) 379 86.6 3.2e-14 gi|194228128|ref|XP_001499348.2| PREDICTED: simila ( 609) 354 81.3 5.8e-13 gi|74008337|ref|XP_538116.2| PREDICTED: similar to ( 608) 353 81.1 6.7e-13 gi|26333083|dbj|BAC30259.1| unnamed protein produc ( 405) 336 77.5 5.3e-12 gi|75042331|sp|Q5RDG2.1|ARMX5_PONAB RecName: Full= ( 558) 328 76.0 2.1e-11 gi|51476655|emb|CAH18306.1| hypothetical protein [ ( 558) 321 74.6 5.5e-11 gi|74749066|sp|Q6P1M9.1|ARMX5_HUMAN RecName: Full= ( 558) 321 74.6 5.5e-11 gi|10434759|dbj|BAB14367.1| unnamed protein produc ( 558) 320 74.4 6.4e-11 gi|84027759|sp|Q3UZB0.1|ARMX5_MOUSE RecName: Full= ( 606) 304 71.2 6.4e-10 gi|20071902|gb|AAH27106.1| Armcx5 protein [Mus mus ( 497) 284 67.1 9.1e-09 gi|74008345|ref|XP_538117.2| PREDICTED: similar to (1318) 233 57.1 2.4e-05 gi|109131624|ref|XP_001082557.1| PREDICTED: simila (1395) 233 57.1 2.5e-05 gi|151556009|gb|AAI49869.1| GPRASP1 protein [Bos t ( 763) 229 56.1 2.8e-05 gi|194228132|ref|XP_001499268.2| PREDICTED: G prot ( 840) 229 56.1 3e-05 gi|12653989|gb|AAH00792.1| ARMCX5 protein [Homo sa ( 283) 220 53.9 4.7e-05 gi|148691892|gb|EDL23839.1| mCG140093 [Mus musculu ( 307) 215 53.0 0.0001 gi|110761985|ref|XP_001122222.1| PREDICTED: hypoth ( 120) 181 45.7 0.0058 >>gi|148691893|gb|EDL23840.1| mCG114181, isoform CRA_a [ (550 aa) initn: 2406 init1: 2406 opt: 2406 Z-score: 2632.5 bits: 496.3 E(): 6.4e-138 Smith-Waterman score: 2406; 100.000% identity (100.000% similar) in 360 aa overlap (1-360:1-360) 10 20 30 40 50 60 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG 10 20 30 40 50 60 70 80 90 100 110 120 mKIAA1 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN 70 80 90 100 110 120 130 140 150 160 170 180 mKIAA1 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEEPAPRTSHKSRSGAEEEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEEPAPRTSHKSRSGAEEEEE 130 140 150 160 170 180 190 200 210 220 230 240 mKIAA1 ENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTPAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTPAV 190 200 210 220 230 240 250 260 270 280 290 300 mKIAA1 LGYRSQDSSEARSSSYIVLASNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LGYRSQDSSEARSSSYIVLASNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQ 250 260 270 280 290 300 310 320 330 340 350 360 mKIAA1 QIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFA 310 320 330 340 350 360 gi|148 QEFINEVGVVTLIESLLSFSSPEVSIKKAVITLNSSGDDRYNKVEFHVKHMCKETVSFPL 370 380 390 400 410 420 >>gi|81885538|sp|Q6PB60.1|BHLH9_MOUSE RecName: Full=Prot (539 aa) initn: 2332 init1: 2332 opt: 2332 Z-score: 2551.7 bits: 481.3 E(): 2e-133 Smith-Waterman score: 2332; 100.000% identity (100.000% similar) in 349 aa overlap (12-360:1-349) 10 20 30 40 50 60 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG ::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 MTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG 10 20 30 40 70 80 90 100 110 120 mKIAA1 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA1 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEEPAPRTSHKSRSGAEEEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEEPAPRTSHKSRSGAEEEEE 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA1 ENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTPAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 ENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTPAV 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA1 LGYRSQDSSEARSSSYIVLASNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 LGYRSQDSSEARSSSYIVLASNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQ 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA1 QIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 QIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFA 290 300 310 320 330 340 gi|818 QEFINEVGVVTLIESLLSFSSPEVSIKKAVITLNSSGDDRYNKVEFHVKHMCKETVSFPL 350 360 370 380 390 400 >>gi|81864868|sp|Q71HP2.1|BHLH9_RAT RecName: Full=Protei (539 aa) initn: 2210 init1: 2210 opt: 2210 Z-score: 2418.3 bits: 456.6 E(): 5.4e-126 Smith-Waterman score: 2210; 93.123% identity (99.140% similar) in 349 aa overlap (12-360:1-349) 10 20 30 40 50 60 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG ::::::::::::::::::::::.:.::::::::.:::::.::::::::: gi|818 MTGSKNKARAQAKLEKRASAQAKAAAEREAANAGRGAGKNRDKGKGKAG 10 20 30 40 70 80 90 100 110 120 mKIAA1 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN ::.:::::.:::::.::::::::::::::::..::::::::..:::.:::.::::::::. gi|818 SKTDAVAEAKAGSKSKVVAETKEGARPESKAVAKGTSDFNHKAENKYARSARKDKPSSDS 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA1 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEEPAPRTSHKSRSGAEEEEE :::::::::::::::::::.:::::::::::::::::::.:: .:::::::::::::::: gi|818 WFWAGEDSGINSWFWKGEEVSNNSVAKCENKPSTSIQARVEEHTPRTSHKSRSGAEEEEE 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA1 ENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTPAV :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|818 ENVIGNWFWEGDDTGFDSDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTPAV 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA1 LGYRSQDSSEARSSSYIVLASNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQ ::::::::::.: :::::::::::::::.:::::::::: :::::::::::::::::::: gi|818 LGYRSQDSSEGRPSSYIVLASNEEETSTTCTKNTRSSLQPIPEYPFGSDPCIQTLDEIRQ 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA1 QIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFA ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|818 QIKIREENGIKPFACPCKMECYLDSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFA 290 300 310 320 330 340 gi|818 QEFINEVGVVTLIESLLSFSSPEVSIKKAVITLNSSGDDRQQMVEFHVKHMCKETVSFPL 350 360 370 380 390 400 >>gi|74749201|sp|Q6PI77.1|BHLH9_HUMAN RecName: Full=Prot (547 aa) initn: 1569 init1: 553 opt: 1528 Z-score: 1672.8 bits: 318.7 E(): 1.8e-84 Smith-Waterman score: 1528; 66.201% identity (83.799% similar) in 358 aa overlap (12-360:1-357) 10 20 30 40 50 60 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG :.:.:::.::::: ::.:. ::.: :::::... : ..:.: :.:.:.: gi|747 MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKAKAKTG 10 20 30 40 70 80 90 100 110 120 mKIAA1 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN ::.:::::.:: ::.:::::::::: : :.: :. .::. .. :. . :: :.. ..: gi|747 SKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCKNEAGTDA 50 60 70 80 90 100 130 140 150 160 170 mKIAA1 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEE--PAPRTSHKSRSGAEEE ::::::.. ::::::.::: ..:: . ..:: . :. ::: :: .. : ::::::: gi|747 WFWAGEEATINSWFWNGEE-AGNSFSTKNDKPEIGAQVCAEELEPAAGADCKPRSGAEEE 110 120 130 140 150 160 180 190 200 210 220 230 mKIAA1 EEENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTP ::::::::::::::::.:: .:::: .::::::: :::::.::::::::::::.:::::: gi|747 EEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTP 170 180 190 200 210 220 240 250 260 270 280 290 mKIAA1 AVLGYRSQDSSEARSSSYIVLASNEEET-----STAC--TKNTRSSLQSIPEYPFGSDPC ::::.::: ::: ::::::: ::.. .::: ..:::: : ::: : :::: gi|747 AVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQPIPECRFDSDPC 230 240 250 260 270 280 300 310 320 330 340 350 mKIAA1 IQTLDEIRQQIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAM :::.::::.::.::: :::::::::::.:::.:: ::::::..:::::::::::::.::: gi|747 IQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAM 290 300 310 320 330 340 360 mKIAA1 GIHKVHPFA :.:.::::: gi|747 GVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHM 350 360 370 380 390 400 >>gi|75049243|sp|Q9BE11.1|BHLH9_MACFA RecName: Full=Prot (547 aa) initn: 1559 init1: 549 opt: 1517 Z-score: 1660.8 bits: 316.5 E(): 8.4e-84 Smith-Waterman score: 1517; 65.642% identity (83.520% similar) in 358 aa overlap (12-360:1-357) 10 20 30 40 50 60 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG :::.:::.::::: ::. .::.: :::::... : ..:.: :.:.:.: gi|750 MTGTKNKTRAQAKTEKKPVTQAKAGAEREATGVVRPVAKTRAKAKAKTG 10 20 30 40 70 80 90 100 110 120 mKIAA1 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN ::.:::::.:: ::.:::::.:::: : :.: .. .::. .. :. . :: ... . : gi|750 SKTDAVAEMKAVSKNKVVAEVKEGALSEPKTLGRAMGDFSSKAGNESTSSTCENEAGIDA 50 60 70 80 90 100 130 140 150 160 170 mKIAA1 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEE--PAPRTSHKSRSGAEEE ::::::.. ::::::.::: .:.: .: ..:: . :. ::: :: .. : ::::::: gi|750 WFWAGEEATINSWFWNGEEAGNSSSTK-NDKPEIGAQVCAEELEPAAGADCKPRSGAEEE 110 120 130 140 150 160 180 190 200 210 220 230 mKIAA1 EEENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTP ::::::::::::::::.:: .:::: .::::::. :::::.::::::::::::.:::::: gi|750 EEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPLYEINEKNRPKDWSEVTIWPNAPAVTP 170 180 190 200 210 220 240 250 260 270 280 290 mKIAA1 AVLGYRSQDSSEARSSSYIVLASNEEET-----STAC--TKNTRSSLQSIPEYPFGSDPC ::::.::: ::: ::::::: ::.. .::: ..:::: : ::: : :::: gi|750 AVLGFRSQAPSEASPPSYIVLASAEENACSLPGATACRPSRNTRSCSQPIPECRFDSDPC 230 240 250 260 270 280 300 310 320 330 340 350 mKIAA1 IQTLDEIRQQIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAM :::.::::.::.::: :::::::::::.:::.:: :::::::.:::::::::::::.::: gi|750 IQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVNLLKSTTDPLIHKIARIAM 290 300 310 320 330 340 360 mKIAA1 GIHKVHPFA :.:.::::: gi|750 GVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHM 350 360 370 380 390 400 >>gi|109131640|ref|XP_001083873.1| PREDICTED: similar to (547 aa) initn: 1558 init1: 549 opt: 1516 Z-score: 1659.7 bits: 316.3 E(): 9.7e-84 Smith-Waterman score: 1516; 65.642% identity (83.520% similar) in 358 aa overlap (12-360:1-357) 10 20 30 40 50 60 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG :::.:::.::::: ::. .::.: :::::... : ..:.: :.:.:.: gi|109 MTGTKNKTRAQAKTEKKPVTQAKAGAEREATGVVRPVAKTRAKAKAKTG 10 20 30 40 70 80 90 100 110 120 mKIAA1 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN ::.:::::.:: ::.:::::.:::: : :.: .. .::. .. :. . :: :.. . : gi|109 SKTDAVAEMKAVSKNKVVAEVKEGALSEPKTLGRAMGDFSSKAGNESTSSTCKNEAGIDA 50 60 70 80 90 100 130 140 150 160 170 mKIAA1 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEE--PAPRTSHKSRSGAEEE ::::::.. ::::::.::: .:.: .: ..:: . :. ::: :: .. : ::::::: gi|109 WFWAGEEATINSWFWNGEEAGNSSSTK-NDKPEIGAQVCAEELEPAAGADCKPRSGAEEE 110 120 130 140 150 160 180 190 200 210 220 230 mKIAA1 EEENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTP ::::::::::::::::.:: .:::: .::::::. :::::.::::::::::::.:::::: gi|109 EEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPLYEINEKNRPKDWSEVTIWPNAPAVTP 170 180 190 200 210 220 240 250 260 270 280 290 mKIAA1 AVLGYRSQDSSEARSSSYIVLASNEEET-----STAC--TKNTRSSLQSIPEYPFGSDPC ::::.::: ::: ::::::: ::.. .::: ..:::: : ::: : :::: gi|109 AVLGFRSQAPSEASPPSYIVLASAEENACSLPGATACRPSRNTRSCSQPIPECRFDSDPC 230 240 250 260 270 280 300 310 320 330 340 350 mKIAA1 IQTLDEIRQQIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAM :::.::::.::.::: :::::::::::.:::.:: ::::::..:::::::::::::.::: gi|109 IQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAM 290 300 310 320 330 340 360 mKIAA1 GIHKVHPFA :.:.::::: gi|109 GVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHM 350 360 370 380 390 400 >>gi|74152360|dbj|BAE33934.1| unnamed protein product [M (220 aa) initn: 1479 init1: 1479 opt: 1479 Z-score: 1624.7 bits: 308.5 E(): 8.7e-82 Smith-Waterman score: 1479; 100.000% identity (100.000% similar) in 220 aa overlap (12-231:1-220) 10 20 30 40 50 60 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG ::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 MTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG 10 20 30 40 70 80 90 100 110 120 mKIAA1 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA1 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEEPAPRTSHKSRSGAEEEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEEPAPRTSHKSRSGAEEEEE 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA1 ENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTPAV ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWP 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA1 LGYRSQDSSEARSSSYIVLASNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQ >>gi|74008391|ref|XP_538118.2| PREDICTED: similar to bas (535 aa) initn: 1185 init1: 524 opt: 1313 Z-score: 1438.0 bits: 275.2 E(): 2.2e-71 Smith-Waterman score: 1373; 59.104% identity (82.073% similar) in 357 aa overlap (12-360:1-345) 10 20 30 40 50 60 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG :::.::..: .:: .:::: ::.: .:::... : ..:..::. .: : gi|740 MTGAKNEGRNKAKTQKRASLQAEA--KREATGVVRPVAKTQDKAIAKPG 10 20 30 40 70 80 90 100 110 120 mKIAA1 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN :..::.: .:: :..:.:.: .: .:: .::. ..... ..:: ::: . . gi|740 SQADAAAAMKAKSRNKIVTERRE------RAL----ADFSPKARDEATKSTCKDKAGIGT 50 60 70 80 90 130 140 150 160 170 mKIAA1 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAE--EPAPRTSHKSRSGAEEE :::.::.....:::: ::: :: : :: :.: . . . :: : . ..: :...:.::: gi|740 WFWTGEEANVGSWFWDGEEASNRSSAKDEGKAGIGSPSCAEKLESVAEASCKAKQGTEEE 100 110 120 130 140 150 180 190 200 210 220 230 mKIAA1 EEENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWSEVTIWPKAPAVTP :::::::::::.::.:.:: .:.:: .::.::::::::::.::::::::::::::::::: gi|740 EEENVIGNWFWDGDETSFDPNPRPVSRIVRPQPVDEINEKNRPKDWSEVTIWPKAPAVTP 160 170 180 190 200 210 240 250 260 270 280 290 mKIAA1 AVLGYRSQDSSEARSSSYIVLASNEEET-----STAC-TKNTRSSLQSIPEYPFGSDPCI ::::.::: :.. ::::::: ::.. .:.: ...: : : .::::::::::: gi|740 AVLGFRSQVPFETKPPSYIVLASAEENAHSLPVATTCPSRSTTSCSQPVPEYPFGSDPCI 220 230 240 250 260 270 300 310 320 330 340 350 mKIAA1 QTLDEIRQQIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAMG ::..:::.::.::: :::::::::::.:::.:: ::::::..:::::::::::::::::: gi|740 QTIEEIRRQIRIREMNGIKPFACPCKMECYMDSEEFEKLVTLLKSTTDPLIHKIAQIAMG 280 290 300 310 320 330 360 mKIAA1 IHKVHPFA : .::::: gi|740 IINVHPFAQEFINEVGVVTLIESLLSFPSSEIRKKAIITLNPPSGDERQRKIELHVKHMC 340 350 360 370 380 390 >>gi|194680407|ref|XP_001788041.1| PREDICTED: similar to (568 aa) initn: 1341 init1: 555 opt: 1265 Z-score: 1385.2 bits: 265.5 E(): 1.9e-68 Smith-Waterman score: 1286; 55.978% identity (78.533% similar) in 368 aa overlap (16-360:13-378) 10 20 30 40 50 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANR---------GAGKS ::. . .:: :::: ..:. ..:::... : ::.:. gi|194 MPGAKNRRNRNRKNENKKKAKTEKRAVVEAE--GKREATDTVRSAEGKREATGAAKT 10 20 30 40 50 60 70 80 90 100 mKIAA1 RDKGKGKAGSKSDAVAEVKAGSKGKVVAETKE---GARPESKALVKGTSDFNHRTE-NKF . :. .::: ..:::: :: .::.:.:.: :: .::... .. .. : .. . gi|194 QAKAISKAGPRADAVAVVKPASKNKIVTEMKEHLPDVRPKAEDEANRAARFCSAAQATAE 60 70 80 90 100 110 110 120 130 140 150 160 mKIAA1 ARSTRKDKPSSDNWFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAE--EPAP .: : ::: .:. : :::.....::::.:::.... :: :.: .:. . :: ::. gi|194 SRFTCKDKTRTDTCFGAGEEANVGSWFWNGEEIGKHFSAKDEGKADTGPPSCAEKLEPVA 120 130 140 150 160 170 170 180 190 200 210 220 mKIAA1 RTSHKSRSGAEEEEEENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRPKDWS :: :.: ::::::::::::.:::.::.:.:: .:.:: .:.:::::::::::::::::: gi|194 GTSCKARPGAEEEEEENVIGSWFWDGDETSFDPNPRPVSRIIKPQPVDEINEKDRPKDWS 180 190 200 210 220 230 230 240 250 260 270 mKIAA1 EVTIWPKAPAVTPAVLGYRSQDSSEARSSSYIVLASNEEET-----STACTKNTRS---S :::::::::::::::::.::: . : . ::.:::: ::.: .:: .. .:: : gi|194 EVTIWPKAPAVTPAVLGFRSQVTCEKKPPSYVVLASAEENTRSSPVATAAARPSRSTPSS 240 250 260 270 280 290 280 290 300 310 320 330 mKIAA1 LQSIPEYPFGSDPCIQTLDEIRQQIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKS : . :.::::::::::..:::.::.::: ::::::.::::.:::.:: :::.:...::: gi|194 SQPVSEFPFGSDPCIQTIEEIRRQIRIREVNGIKPFSCPCKMECYMDSEEFERLITLLKS 300 310 320 330 340 350 340 350 360 mKIAA1 TTDPLIHKIAQIAMGIHKVHPFA :::::::::::::::: .::::: gi|194 TTDPLIHKIAQIAMGIINVHPFAQEFINEVGVVTLIESLLSFPSSEMRKKAVITLNPPSG 360 370 380 390 400 410 >>gi|123218520|emb|CAM27377.1| basic helix-loop-helix do (95 aa) initn: 583 init1: 583 opt: 583 Z-score: 650.3 bits: 127.0 E(): 1.6e-27 Smith-Waterman score: 583; 100.000% identity (100.000% similar) in 95 aa overlap (12-106:1-95) 10 20 30 40 50 60 mKIAA1 DSTGVYNCASTMTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG ::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAG 10 20 30 40 70 80 90 100 110 120 mKIAA1 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDN :::::::::::::::::::::::::::::::::::::::::::::: gi|123 SKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGTSDFNHRTENK 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 WFWAGEDSGINSWFWKGEELSNNSVAKCENKPSTSIQARAEEPAPRTSHKSRSGAEEEEE 360 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 11:42:56 2009 done: Sun Mar 15 11:49:03 2009 Total Scan time: 838.490 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]