FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1966.ptfa, 507 aa
 vs ./tmplib.26680 library

1768510 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.8279+/-0.00753; mu= -2.0296+/- 0.500
 mean_var=309.3958+/-71.807, 0's: 0 Z-trim: 7  B-trim: 0 in 0/36
 Lambda= 0.0729

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4096  ( 1264 res)   mfj04296                  (1264)  233   38  0.0044


>>mKIAA4096  ( 1264 res)   mfj04296                       (1264 aa)
 initn: 759 init1: 221 opt: 233  Z-score: 147.8  bits: 38.2 E(): 0.0044
Smith-Waterman score: 233;  64.151% identity (65.385% ungapped) in 53 aa overlap (454-506:189-240)

           430       440       450       460       470       480   
mKIAA1 HEARYRDKRVHDYDMRVDDFLRRTQAVASGRRSRPRERDRERERDRPRDNRRDRERDRGR
                                     .::: :.:::.:.::: ::  :::.::: :
mKIAA4 VLKELEALMPSAAGQEKQRDPEHRDRTKKKKRSRSRDRDRDRDRDRDRDRDRDRDRDRDR
      160       170       180       190       200       210        

           490       500                                           
mKIAA1 DRERERERICDRDRDRGERGRYRR                                    
       ::...:::  ::.::: :: : :                                     
mKIAA4 DRDKDRERDRDRERDR-ERDRERDHKRRHRSRSRSHSRTRERTKGKSRYRSRSRSQSPFK
      220       230        240       250       260       270       




507 residues in 1 query   sequences
1768510 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:56:42 2006 done: Mon Mar 27 10:56:43 2006
 Scan time:  0.700 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]