# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mic07029.fasta.nr -Q ../query/mKIAA1966.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1966, 507 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7904646 sequences Expectation_n fit: rho(ln(x))= 6.0226+/-0.000206; mu= 8.7922+/- 0.011 mean_var=142.4590+/-26.668, 0's: 37 Z-trim: 93 B-trim: 0 in 0/66 Lambda= 0.107456 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|124430549|ref|NP_808348.2| YTH domain containin ( 736) 3510 556.0 1.3e-155 gi|47606762|sp|Q96MU7.3|YTDC1_HUMAN RecName: Full= ( 727) 3471 549.9 8.5e-154 gi|114594504|ref|XP_517262.2| PREDICTED: splicing ( 727) 3471 549.9 8.5e-154 gi|149035126|gb|EDL89830.1| splicing factor YT521- ( 738) 3470 549.8 9.5e-154 gi|28380115|sp|Q9QY02.1|YTDC1_RAT RecName: Full=YT ( 738) 3460 548.2 2.8e-153 gi|149751625|ref|XP_001501576.1| PREDICTED: simila ( 730) 3437 544.6 3.3e-152 gi|88954297|gb|AAI14070.1| YTH domain containing 1 ( 717) 3374 534.9 2.8e-149 gi|224049584|ref|XP_002197763.1| PREDICTED: YTH do ( 704) 3349 531.0 4.1e-148 gi|148706022|gb|EDL37969.1| mCG1787 [Mus musculus] ( 727) 3333 528.5 2.3e-147 gi|149035124|gb|EDL89828.1| splicing factor YT521- ( 628) 3329 527.8 3.3e-147 gi|54038191|gb|AAH84321.1| LOC495129 protein [Xeno ( 704) 2989 475.2 2.6e-131 gi|149035125|gb|EDL89829.1| splicing factor YT521- ( 712) 2918 464.2 5.4e-128 gi|2696611|dbj|BAA23885.1| RNA splicing-related pr ( 712) 2908 462.6 1.6e-127 gi|63995069|gb|AAY41024.1| unknown [Homo sapiens] ( 658) 2896 460.7 5.4e-127 gi|31808095|gb|AAH53863.1| YTH domain containing 1 ( 709) 2896 460.8 5.7e-127 gi|16551831|dbj|BAB71181.1| unnamed protein produc ( 658) 2887 459.3 1.4e-126 gi|149751627|ref|XP_001501568.1| PREDICTED: simila ( 712) 2876 457.7 4.9e-126 gi|73975101|ref|XP_532391.2| PREDICTED: similar to ( 712) 2876 457.7 4.9e-126 gi|51703808|gb|AAH81325.1| MGC89461 protein [Xenop ( 673) 2638 420.7 6e-115 gi|74268102|gb|AAI02815.1| YTHDC1 protein [Bos tau ( 376) 2590 413.0 7.2e-113 gi|18490765|gb|AAH22697.1| Ythdc1 protein [Mus mus ( 350) 2538 404.9 1.8e-110 gi|55250288|gb|AAH85378.1| Zgc:101592 [Danio rerio ( 679) 2281 365.4 2.8e-98 gi|220672867|emb|CAX13792.1| novel protein (zgc:10 ( 679) 2274 364.3 5.9e-98 gi|28981324|gb|AAH48817.1| Ythdc1 protein [Mus mus ( 294) 2160 346.2 7.1e-93 gi|109074647|ref|XP_001098270.1| PREDICTED: simila ( 654) 1649 267.4 8.4e-69 gi|126304508|ref|XP_001362487.1| PREDICTED: simila ( 620) 1539 250.3 1.1e-63 gi|126304510|ref|XP_001362567.1| PREDICTED: simila ( 620) 1530 248.9 2.9e-63 gi|126349835|ref|XP_001369644.1| PREDICTED: simila ( 620) 1530 248.9 2.9e-63 gi|126304512|ref|XP_001362659.1| PREDICTED: simila ( 620) 1530 248.9 2.9e-63 gi|126304514|ref|XP_001362747.1| PREDICTED: simila ( 620) 1526 248.3 4.5e-63 gi|73975097|ref|XP_861358.1| PREDICTED: similar to ( 484) 1459 237.8 5.1e-60 gi|55729205|emb|CAH91339.1| hypothetical protein [ ( 482) 1454 237.0 8.7e-60 gi|73975103|ref|XP_861427.1| PREDICTED: similar to ( 209) 1426 232.2 1e-58 gi|60099225|emb|CAH65443.1| hypothetical protein [ ( 473) 1218 200.4 8.9e-49 gi|224166909|ref|XP_002187972.1| PREDICTED: simila ( 176) 1189 195.4 1.1e-47 gi|126349833|ref|XP_001369617.1| PREDICTED: simila ( 486) 1185 195.3 3.1e-47 gi|159164852|pdb|2YUD|A Chain A, Solution Structur ( 180) 1178 193.7 3.5e-47 gi|26348613|dbj|BAC37946.1| unnamed protein produc ( 164) 1159 190.7 2.5e-46 gi|115901588|ref|XP_783255.2| PREDICTED: hypotheti ( 763) 1166 192.6 3.2e-46 gi|47216984|emb|CAG04926.1| unnamed protein produc ( 592) 1035 172.2 3.6e-40 gi|198435163|ref|XP_002127950.1| PREDICTED: simila ( 624) 943 157.9 7.2e-36 gi|110760146|ref|XP_395221.3| PREDICTED: similar t ( 545) 922 154.6 6.3e-35 gi|212511561|gb|EEB14501.1| splicing factor yt521- ( 431) 902 151.4 4.7e-34 gi|91092310|ref|XP_969804.1| PREDICTED: similar to ( 435) 875 147.2 8.6e-33 gi|108882333|gb|EAT46558.1| splicing factor yt521- ( 594) 865 145.8 3.1e-32 gi|167866328|gb|EDS29711.1| splicing factor yt521- ( 569) 837 141.4 6e-31 gi|156537207|ref|XP_001604858.1| PREDICTED: simila ( 556) 836 141.3 6.6e-31 gi|157015844|gb|EDO63761.1| AGAP005940-PA [Anophel ( 879) 776 132.2 5.6e-28 gi|157015845|gb|EAA11066.4| AGAP005940-PB [Anophel ( 790) 774 131.8 6.5e-28 gi|198151298|gb|EDY74147.1| GA28277 [Drosophila ps ( 735) 748 127.8 1e-26 >>gi|124430549|ref|NP_808348.2| YTH domain containing 1 (736 aa) initn: 2742 init1: 2447 opt: 3510 Z-score: 2950.1 bits: 556.0 E(): 1.3e-155 Smith-Waterman score: 3510; 98.252% identity (98.447% similar) in 515 aa overlap (1-507:222-736) 10 20 30 mKIAA1 EEVDEDAEEEEEEDEEEEEDEDEDEEEEEY :::::::::::::::::::::::::::::: gi|124 EQGNNTENEEEGGEEDVEEDEEVDEDAEDDEEVDEDAEEEEEEDEEEEEDEDEDEEEEEY 200 210 220 230 240 250 40 50 60 70 80 90 mKIAA1 EQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 EQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPI 260 270 280 290 300 310 100 110 120 130 140 150 mKIAA1 VFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 VFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSL 320 330 340 350 360 370 160 170 180 190 200 210 mKIAA1 AKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 AKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVL 380 390 400 410 420 430 220 230 240 250 260 270 mKIAA1 PAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 PAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCL 440 450 460 470 480 490 280 290 300 310 320 330 mKIAA1 LFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 LFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPR 500 510 520 530 540 550 340 350 360 370 380 mKIAA1 IDYPPEFHQRPGYVKDPRYQEVD--------RRFSGVRRDVFLNGSYNDYVREFHNMGPP ::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|124 IDYPPEFHQRPGYVKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYNDYVREFHNMGPP 560 570 580 590 600 610 390 400 410 420 430 440 mKIAA1 PPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 PPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDD 620 630 640 650 660 670 450 460 470 480 490 500 mKIAA1 FLRRTQAVASGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRGER ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 FLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRGER 680 690 700 710 720 730 mKIAA1 GRYRR ::::: gi|124 GRYRR >>gi|47606762|sp|Q96MU7.3|YTDC1_HUMAN RecName: Full=YTH (727 aa) initn: 3452 init1: 3452 opt: 3471 Z-score: 2917.5 bits: 549.9 E(): 8.5e-154 Smith-Waterman score: 3471; 97.830% identity (99.606% similar) in 507 aa overlap (1-507:223-727) 10 20 30 mKIAA1 EEVDEDAEEEEEEDEEEEEDEDEDEEEEEY ::::::.:::::: ::::.:.:.:::::: gi|476 EQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEE--EEEEEEEEEEEEEEY 200 210 220 230 240 250 40 50 60 70 80 90 mKIAA1 EQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 EQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPI 260 270 280 290 300 310 100 110 120 130 140 150 mKIAA1 VFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 VFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSL 320 330 340 350 360 370 160 170 180 190 200 210 mKIAA1 AKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 AKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVL 380 390 400 410 420 430 220 230 240 250 260 270 mKIAA1 PAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 PAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCL 440 450 460 470 480 490 280 290 300 310 320 330 mKIAA1 LFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPR ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|476 LFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPR 500 510 520 530 540 550 340 350 360 370 380 390 mKIAA1 IDYPPEFHQRPGYVKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPP :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|476 IDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPP 560 570 580 590 600 610 400 410 420 430 440 450 mKIAA1 YPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAV :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 YPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAV 620 630 640 650 660 670 460 470 480 490 500 mKIAA1 ASGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRGERGRYRR .::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|476 VSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRGERGRYRR 680 690 700 710 720 >>gi|114594504|ref|XP_517262.2| PREDICTED: splicing fact (727 aa) initn: 3452 init1: 3452 opt: 3471 Z-score: 2917.5 bits: 549.9 E(): 8.5e-154 Smith-Waterman score: 3471; 97.830% identity (99.606% similar) in 507 aa overlap (1-507:223-727) 10 20 30 mKIAA1 EEVDEDAEEEEEEDEEEEEDEDEDEEEEEY ::::::.:::::: ::::.:.:.:::::: gi|114 EQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEE--EEEEEEEEEEEEEEY 200 210 220 230 240 250 40 50 60 70 80 90 mKIAA1 EQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPI 260 270 280 290 300 310 100 110 120 130 140 150 mKIAA1 VFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSL 320 330 340 350 360 370 160 170 180 190 200 210 mKIAA1 AKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVL 380 390 400 410 420 430 220 230 240 250 260 270 mKIAA1 PAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCL 440 450 460 470 480 490 280 290 300 310 320 330 mKIAA1 LFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPR ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPR 500 510 520 530 540 550 340 350 360 370 380 390 mKIAA1 IDYPPEFHQRPGYVKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPP :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|114 IDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPP 560 570 580 590 600 610 400 410 420 430 440 450 mKIAA1 YPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAV :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAV 620 630 640 650 660 670 460 470 480 490 500 mKIAA1 ASGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRGERGRYRR .::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|114 VSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRGERGRYRR 680 690 700 710 720 >>gi|149035126|gb|EDL89830.1| splicing factor YT521-B, i (738 aa) initn: 2648 init1: 2373 opt: 3470 Z-score: 2916.6 bits: 549.8 E(): 9.5e-154 Smith-Waterman score: 3470; 96.905% identity (98.066% similar) in 517 aa overlap (1-507:222-738) 10 20 mKIAA1 EEVDEDAEEEE--EEDEEEEEDEDEDEEEE ::::::::::: :::::::..:.:.:::: gi|149 EQGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEEEEE 200 210 220 230 240 250 30 40 50 60 70 80 mKIAA1 EYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGIS 260 270 280 290 300 310 90 100 110 120 130 140 mKIAA1 PIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENV 320 330 340 350 360 370 150 160 170 180 190 200 mKIAA1 SLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW 380 390 400 410 420 430 210 220 230 240 250 260 mKIAA1 VLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 440 450 460 470 480 490 270 280 290 300 310 320 mKIAA1 CLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 CLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKK 500 510 520 530 540 550 330 340 350 360 370 380 mKIAA1 PRIDYPPEFHQRPGYVKDPRYQEVD--------RRFSGVRRDVFLNGSYNDYVREFHNMG :::::::::::::::.::::::::: ::::::::::::::::::::::::::: gi|149 PRIDYPPEFHQRPGYLKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYNDYVREFHNMG 560 570 580 590 600 610 390 400 410 420 430 440 mKIAA1 PPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV 620 630 640 650 660 670 450 460 470 480 490 500 mKIAA1 DDFLRRTQAVASGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRG ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRG 680 690 700 710 720 730 mKIAA1 ERGRYRR ::::::: gi|149 ERGRYRR >>gi|28380115|sp|Q9QY02.1|YTDC1_RAT RecName: Full=YTH do (738 aa) initn: 2638 init1: 2363 opt: 3460 Z-score: 2908.2 bits: 548.2 E(): 2.8e-153 Smith-Waterman score: 3460; 96.712% identity (97.872% similar) in 517 aa overlap (1-507:222-738) 10 20 mKIAA1 EEVDEDAEEEE--EEDEEEEEDEDEDEEEE ::::::::::: :::::::..:.:.:::: gi|283 EQGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEEEEE 200 210 220 230 240 250 30 40 50 60 70 80 mKIAA1 EYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|283 EYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGIS 260 270 280 290 300 310 90 100 110 120 130 140 mKIAA1 PIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENV ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|283 PIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKSVLQDARFFLIKSNNHENV 320 330 340 350 360 370 150 160 170 180 190 200 mKIAA1 SLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|283 SLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW 380 390 400 410 420 430 210 220 230 240 250 260 mKIAA1 VLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|283 VLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 440 450 460 470 480 490 270 280 290 300 310 320 mKIAA1 CLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|283 CLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKK 500 510 520 530 540 550 330 340 350 360 370 380 mKIAA1 PRIDYPPEFHQRPGYVKDPRYQEVD--------RRFSGVRRDVFLNGSYNDYVREFHNMG :::::::::::::::.::::::::: ::::::::::::::::::::::::::: gi|283 PRIDYPPEFHQRPGYLKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYNDYVREFHNMG 560 570 580 590 600 610 390 400 410 420 430 440 mKIAA1 PPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|283 PPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV 620 630 640 650 660 670 450 460 470 480 490 500 mKIAA1 DDFLRRTQAVASGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRG ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|283 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRG 680 690 700 710 720 730 mKIAA1 ERGRYRR ::::::: gi|283 ERGRYRR >>gi|149751625|ref|XP_001501576.1| PREDICTED: similar to (730 aa) initn: 3418 init1: 3418 opt: 3437 Z-score: 2889.0 bits: 544.6 E(): 3.3e-152 Smith-Waterman score: 3437; 96.660% identity (98.821% similar) in 509 aa overlap (1-507:222-730) 10 20 mKIAA1 EEVDEDAEEEEEEDEEEEEDEDEDEEEEE- ::::::.::::::.:::::.:.:.::::: gi|149 DEQGNNTENEEEGVEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEEEE 200 210 220 230 240 250 30 40 50 60 70 80 mKIAA1 -YEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGIS :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|149 EYEQDERDQKEEGNDYDTRSEASDSDSESVSFTDGSVRSGSGTDGSDEKKKERKRARGIS 260 270 280 290 300 310 90 100 110 120 130 140 mKIAA1 PIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENV 320 330 340 350 360 370 150 160 170 180 190 200 mKIAA1 SLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|149 SLAKAKGVWSTLPVNEKKLNAAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW 380 390 400 410 420 430 210 220 230 240 250 260 mKIAA1 VLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VLPAGMNAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 440 450 460 470 480 490 270 280 290 300 310 320 mKIAA1 CLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKK ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|149 CLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKK 500 510 520 530 540 550 330 340 350 360 370 380 mKIAA1 PRIDYPPEFHQRPGYVKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGM ::::: :::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|149 PRIDYAPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGM 560 570 580 590 600 610 390 400 410 420 430 440 mKIAA1 PPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQ ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 APYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQ 620 630 640 650 660 670 450 460 470 480 490 500 mKIAA1 AVASGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRGERGRYRR ::.::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|149 AVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRGERGRYRR 680 690 700 710 720 730 >>gi|88954297|gb|AAI14070.1| YTH domain containing 1 [Bo (717 aa) initn: 3374 init1: 3374 opt: 3374 Z-score: 2836.3 bits: 534.9 E(): 2.8e-149 Smith-Waterman score: 3374; 96.774% identity (99.395% similar) in 496 aa overlap (1-496:222-717) 10 20 30 mKIAA1 EEVDEDAEEEEEEDEEEEEDEDEDEEEEEY ::::::.::::::.:::::.:.:.:::::: gi|889 DEQGNNTENEEEGVEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEEEY 200 210 220 230 240 250 40 50 60 70 80 90 mKIAA1 EQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPI ::::::::::::::::::::::: ::::.::::::::::::::::::::::::::::::: gi|889 EQDERDQKEEGNDYDTRSEASDSDSESVTFTDGSVRSGSGTDGSDEKKKERKRARGISPI 260 270 280 290 300 310 100 110 120 130 140 150 mKIAA1 VFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSL .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|889 IFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSL 320 330 340 350 360 370 160 170 180 190 200 210 mKIAA1 AKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVL ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|889 AKAKGVWSTLPVNEKKLNVAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVL 380 390 400 410 420 430 220 230 240 250 260 270 mKIAA1 PAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|889 PAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCL 440 450 460 470 480 490 280 290 300 310 320 330 mKIAA1 LFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPR ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|889 LFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPR 500 510 520 530 540 550 340 350 360 370 380 390 mKIAA1 IDYPPEFHQRPGYVKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPP ::: :::::::::.:::::::::::::::::::::::::::::::::::::::::::: : gi|889 IDYAPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMTP 560 570 580 590 600 610 400 410 420 430 440 450 mKIAA1 YPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAV :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|889 YPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAV 620 630 640 650 660 670 460 470 480 490 500 mKIAA1 ASGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRGERGRYRR .::::::::::::::::::::::::::::::::::::::::.:::: gi|889 VSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRD 680 690 700 710 >>gi|224049584|ref|XP_002197763.1| PREDICTED: YTH domain (704 aa) initn: 3296 init1: 3296 opt: 3349 Z-score: 2815.4 bits: 531.0 E(): 4.1e-148 Smith-Waterman score: 3349; 93.910% identity (97.642% similar) in 509 aa overlap (2-507:197-704) 10 20 mKIAA1 EEVDEDAEEEEEEDEEEEEDE---DEDEEEE : .:.. ::::.:: ::..: : .:.:: gi|224 SHSSKEEVNSEEYCSDHETGSSGSSEQGNTENEEEGMEEEEDDEGEEDEEVEEDGEEDEE 170 180 190 200 210 220 30 40 50 60 70 80 mKIAA1 EYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGIS ::::::::::: ::::::::::::: :::.::::::::::::.:.::::::::::::::: gi|224 EYEQDERDQKE-GNDYDTRSEASDSDSESASFTDGSVRSGSGSDASDEKKKERKRARGIS 230 240 250 260 270 280 90 100 110 120 130 140 mKIAA1 PIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENV ::::::::::::::::::::::::::::::::.:::::::::.::::::::::::::::: gi|224 PIVFDRSGSSASESYAGSEKKHEKLSSSVRAVQKDQTSKLKYILQDARFFLIKSNNHENV 290 300 310 320 330 340 150 160 170 180 190 200 mKIAA1 SLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|224 SLAKAKGVWSTLPVNEKKLNAAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW 350 360 370 380 390 400 210 220 230 240 250 260 mKIAA1 VLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL ::::::.:::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|224 VLPAGMNAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIEPECGTQL 410 420 430 440 450 460 270 280 290 300 310 320 mKIAA1 CLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKK ::::::::::::::.:::::::::::::::::::::::.::::::::::::::::::::: gi|224 CLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRRDPVRDVGRRRPEDYDIHNSRKK 470 480 490 500 510 520 330 340 350 360 370 380 mKIAA1 PRIDYPPEFHQRPGYVKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGM :::::::::::::::.::::: :::::::::::::::::::::::::::::::::::::: gi|224 PRIDYPPEFHQRPGYIKDPRYPEVDRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGM 530 540 550 560 570 580 390 400 410 420 430 440 mKIAA1 PPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQ :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|224 PPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQ 590 600 610 620 630 640 450 460 470 480 490 500 mKIAA1 AVASGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRGERGRYRR ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|224 AVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRGERGRYRR 650 660 670 680 690 700 >>gi|148706022|gb|EDL37969.1| mCG1787 [Mus musculus] (727 aa) initn: 3333 init1: 3333 opt: 3333 Z-score: 2801.9 bits: 528.5 E(): 2.3e-147 Smith-Waterman score: 3333; 99.580% identity (100.000% similar) in 476 aa overlap (32-507:252-727) 10 20 30 40 50 60 mKIAA1 EVDEDAEEEEEEDEEEEEDEDEDEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFT .::::::::::::::::::::::::::::: gi|148 REPYKSQPEKTCLRKRDSERRAKSPTPDGSEDERDQKEEGNDYDTRSEASDSGSESVSFT 230 240 250 260 270 280 70 80 90 100 110 120 mKIAA1 DGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVR 290 300 310 320 330 340 130 140 150 160 170 180 mKIAA1 KDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIF 350 360 370 380 390 400 190 200 210 220 230 240 mKIAA1 SVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHL 410 420 430 440 450 460 250 260 270 280 290 300 mKIAA1 TNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRG 470 480 490 500 510 520 310 320 330 340 350 360 mKIAA1 RPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYVKDPRYQEVDRRFSGVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYVKDPRYQEVDRRFSGVRR 530 540 550 560 570 580 370 380 390 400 410 420 mKIAA1 DVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHP 590 600 610 620 630 640 430 440 450 460 470 480 mKIAA1 VPHEARYRDKRVHDYDMRVDDFLRRTQAVASGRRSRPRERDRERERDRPRDNRRDRERDR :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|148 VPHEARYRDKRVHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDR 650 660 670 680 690 700 490 500 mKIAA1 GRDRERERERICDRDRDRGERGRYRR :::::::::::::::::::::::::: gi|148 GRDRERERERICDRDRDRGERGRYRR 710 720 >>gi|149035124|gb|EDL89828.1| splicing factor YT521-B, i (628 aa) initn: 3329 init1: 3329 opt: 3329 Z-score: 2799.3 bits: 527.8 E(): 3.3e-147 Smith-Waterman score: 3329; 99.370% identity (100.000% similar) in 476 aa overlap (32-507:153-628) 10 20 30 40 50 60 mKIAA1 EVDEDAEEEEEEDEEEEEDEDEDEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFT .::::::::::::::::::::::::::::: gi|149 REPYKSQPEKPCLRKRDSERRAKSPTPDGSEDERDQKEEGNDYDTRSEASDSGSESVSFT 130 140 150 160 170 180 70 80 90 100 110 120 mKIAA1 DGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVR 190 200 210 220 230 240 130 140 150 160 170 180 mKIAA1 KDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIF 250 260 270 280 290 300 190 200 210 220 230 240 mKIAA1 SVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHL 310 320 330 340 350 360 250 260 270 280 290 300 mKIAA1 TNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRG 370 380 390 400 410 420 310 320 330 340 350 360 mKIAA1 RPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYVKDPRYQEVDRRFSGVRR ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|149 RPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRR 430 440 450 460 470 480 370 380 390 400 410 420 mKIAA1 DVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHP 490 500 510 520 530 540 430 440 450 460 470 480 mKIAA1 VPHEARYRDKRVHDYDMRVDDFLRRTQAVASGRRSRPRERDRERERDRPRDNRRDRERDR :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|149 VPHEARYRDKRVHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDR 550 560 570 580 590 600 490 500 mKIAA1 GRDRERERERICDRDRDRGERGRYRR :::::::::::::::::::::::::: gi|149 GRDRERERERICDRDRDRGERGRYRR 610 620 507 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 14:08:23 2009 done: Mon Mar 16 14:15:23 2009 Total Scan time: 941.240 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]