FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1609.ptfa, 274 aa
 vs ./tmplib.26680 library

1768743 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.1692+/-0.00363; mu= 15.9616+/- 0.242
 mean_var=67.7902+/-15.214, 0's: 0 Z-trim: 2  B-trim: 43 in 1/35
 Lambda= 0.1558

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1171  ( 586 res)   mph01652                   ( 586)  125   37  0.0032


>>mKIAA1171  ( 586 res)   mph01652                        (586 aa)
 initn:  94 init1:  67 opt: 125  Z-score: 150.2  bits: 36.7 E(): 0.0032
Smith-Waterman score: 135;  24.365% identity (35.556% ungapped) in 197 aa overlap (55-198:393-580)

           30        40        50        60        70        80    
mKIAA1 QGSCPRSILDVLSVIYLSSHLAPEHRQRWRLLFSTQLHGQSFSQLCSHITSQGPSLLVLE
                                     ::::.  :: :.:..  .  .. :.::...
mKIAA1 ENFHSEIVSVKEMRDIWSWIPERFALCQPLLLFSSLQHGYSLSRFYFQCEGHEPTLLLIK
            370       380       390       400       410       420  

           90       100             110       120                  
mKIAA1 DRDGYVFGGFASCSWEVKPQFQGD------NRCFLFSIAPRM---------------ATH
         .  : :.. : .:  . .: :       ..::.: . :..               :: 
mKIAA1 TTQKEVCGAYLSTDWSERTKFGGKLGFFGTGECFVFRLQPEVQRYEWVVIKHPELTKATS
            430       440       450       460       470       480  

                     130                             140       150 
mKIAA1 LHT----------GYNN--------------HF--------MYLNYGQQTMPNGLGMGGQ
       :..          :. .              ::        :..  :.. .  : : :::
mKIAA1 LKSSEAAGSSSLIGHCSSDPADRLSPFLAARHFNLPSKTESMFMAGGNDCLIIG-GGGGQ
            490       500       510       520       530        540 

             160       170       180       190       200       210 
mKIAA1 HHYFGLWVAADFGKGHSKAKPACTTYNSPQLSAQEDFLFDKMEVWGLGNLLENMRARTRR
           .:.: .:...:..     : :.:.  : . :.::.  .:.::.             
mKIAA1 ----ALYVDGDLNRGRTGH---CDTFNNQPLCS-ENFLIAAVEAWGFQDPDTE       
                 550          560        570       580             

             220       230       240       250       260       270 
mKIAA1 ASWTQIPKPVACWRSADGLGTARDCGKSPGMRTEIRQPLRALLDGEHPGAGAGLPQGCRA




274 residues in 1 query   sequences
1768743 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:49:27 2006 done: Mon Mar 27 10:49:28 2006
 Scan time:  0.470 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]