FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4008.ptfa, 149 aa
 vs ./tmplib.26680 library

1768868 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.7366+/-0.00346; mu= 12.7302+/- 0.232
 mean_var=51.6418+/-11.617, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1785

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0060  ( 274 res)   mnh02088                   ( 274)  765  204 2.5e-54


>>mKIAA0060  ( 274 res)   mnh02088                        (274 aa)
 initn: 765 init1: 765 opt: 765  Z-score: 1067.6  bits: 204.4 E(): 2.5e-54
Smith-Waterman score: 765;  91.935% identity (91.935% ungapped) in 124 aa overlap (24-147:119-242)

                      10        20        30        40        50   
mKIAA4        NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLA
                                     :. ::::::::::::::::::::::.::::
mKIAA0 THILDGNAADLQAECDAFEEKIQAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLA
       90       100       110       120       130       140        

            60        70        80        90       100       110   
mKIAA4 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM
       ::::::::..:::::.:::::::::::::::::.::::::::::::::::::.:::::::
mKIAA0 MDTILANARFFDGDLAKVPTMALTVGVGTVMDAKEVMILITGAHKAFALYKAIEEGVNHM
      150       160       170       180       190       200        

           120       130       140                                 
mKIAA4 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH                        
       ::::::::::::.:::::::::::.:::::::::                          
mKIAA0 WTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKEIQKSQSA
      210       220       230       240       250       260        

mKIAA0 KKPYSD
      270    




149 residues in 1 query   sequences
1768868 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:08 2006 done: Mon Mar 27 10:59:08 2006
 Scan time:  0.350 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]