# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mib36077.fasta.nr -Q ../query/mKIAA4008.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4008, 149 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920695 sequences Expectation_n fit: rho(ln(x))= 4.7037+/-0.000182; mu= 7.8933+/- 0.010 mean_var=58.2015+/-11.667, 0's: 50 Z-trim: 56 B-trim: 1882 in 1/65 Lambda= 0.168115 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|73974970|ref|XP_858814.1| PREDICTED: similar to ( 134) 817 205.8 1.8e-51 gi|73974968|ref|XP_858777.1| PREDICTED: similar to ( 259) 805 203.1 2.3e-50 gi|62089394|dbj|BAD93141.1| glucosamine-6-phosphat ( 294) 805 203.1 2.5e-50 gi|73974966|ref|XP_858737.1| PREDICTED: similar to ( 151) 801 201.9 2.9e-50 gi|148705856|gb|EDL37803.1| mCG10526, isoform CRA_ ( 312) 802 202.4 4.4e-50 gi|81880421|sp|Q9CRC9.1|GNPI2_MOUSE RecName: Full= ( 276) 794 200.4 1.5e-49 gi|74214311|dbj|BAE40396.1| unnamed protein produc ( 276) 794 200.4 1.5e-49 gi|21740309|emb|CAD39163.1| hypothetical protein [ ( 157) 789 199.0 2.3e-49 gi|194382120|dbj|BAG58815.1| unnamed protein produ ( 206) 789 199.1 2.8e-49 gi|37728262|gb|AAO49718.1| putative glucosamine-6- ( 242) 789 199.2 3.2e-49 gi|193806030|sp|A4IHW6.1|GNPI2_XENTR RecName: Full ( 275) 789 199.2 3.5e-49 gi|149035307|gb|EDL90011.1| glucosamine-6-phosphat ( 276) 789 199.2 3.5e-49 gi|73974964|ref|XP_849417.1| PREDICTED: similar to ( 276) 789 199.2 3.5e-49 gi|122145748|sp|Q17QL1.1|GNPI2_BOVIN RecName: Full ( 276) 789 199.2 3.5e-49 gi|126331669|ref|XP_001364721.1| PREDICTED: hypoth ( 276) 789 199.2 3.5e-49 gi|16550419|dbj|BAB70977.1| unnamed protein produc ( 276) 789 199.2 3.5e-49 gi|74723936|sp|Q8TDQ7.1|GNPI2_HUMAN RecName: Full= ( 276) 789 199.2 3.5e-49 gi|194209193|ref|XP_001917218.1| PREDICTED: simila ( 276) 789 199.2 3.5e-49 gi|114593868|ref|XP_001143245.1| PREDICTED: simila ( 399) 789 199.3 4.7e-49 gi|82186728|sp|Q6PA43.1|GNPI2_XENLA RecName: Full= ( 275) 785 198.2 6.9e-49 gi|118090520|ref|XP_420726.2| PREDICTED: hypotheti ( 275) 782 197.5 1.1e-48 gi|224049943|ref|XP_002197439.1| PREDICTED: simila ( 275) 782 197.5 1.1e-48 gi|12855707|dbj|BAB30428.1| unnamed protein produc ( 274) 774 195.6 4.4e-48 gi|119936540|gb|ABM06146.1| glucosamine-6-phosphat ( 289) 769 194.4 1.1e-47 gi|193806029|sp|A4FV08.1|GNPI1_BOVIN RecName: Full ( 289) 769 194.4 1.1e-47 gi|149726244|ref|XP_001504008.1| PREDICTED: simila ( 289) 769 194.4 1.1e-47 gi|3122434|sp|Q64422.1|GNPI1_MESAU RecName: Full=G ( 289) 768 194.1 1.3e-47 gi|53130328|emb|CAG31493.1| hypothetical protein [ ( 288) 767 193.9 1.5e-47 gi|26346516|dbj|BAC36909.1| unnamed protein produc ( 208) 765 193.3 1.6e-47 gi|74188949|dbj|BAE39245.1| unnamed protein produc ( 211) 765 193.3 1.6e-47 gi|5353761|gb|AAD42233.1|AF160355_1 glucosamine-6- ( 289) 765 193.4 2.1e-47 gi|12644084|sp|O88958.2|GNPI1_MOUSE RecName: Full= ( 289) 765 193.4 2.1e-47 gi|149017396|gb|EDL76447.1| rCG49489, isoform CRA_ ( 289) 765 193.4 2.1e-47 gi|193785679|dbj|BAG51114.1| unnamed protein produ ( 255) 764 193.1 2.2e-47 gi|158254808|dbj|BAF83375.1| unnamed protein produ ( 289) 764 193.1 2.5e-47 gi|1171639|sp|P46926.1|GNPI1_HUMAN RecName: Full=G ( 289) 764 193.1 2.5e-47 gi|75054931|sp|Q5R8T8.1|GNPI1_PONAB RecName: Full= ( 289) 764 193.1 2.5e-47 gi|224067347|ref|XP_002193532.1| PREDICTED: glucos ( 254) 761 192.4 3.7e-47 gi|62202396|gb|AAH92982.1| Glucosamine-6-phosphate ( 269) 760 192.2 4.5e-47 gi|15930199|gb|AAH15532.1| Glucosamine-6-phosphate ( 275) 760 192.2 4.6e-47 gi|73949474|ref|XP_535222.2| PREDICTED: similar to ( 289) 760 192.2 4.8e-47 gi|3643245|gb|AAC36739.1| glucosamine-6-phosphate ( 289) 760 192.2 4.8e-47 gi|109079098|ref|XP_001091343.1| PREDICTED: glucos ( 361) 757 191.5 9.5e-47 gi|38014417|gb|AAH60459.1| MGC68566 protein [Xenop ( 289) 755 191.0 1.1e-46 gi|209156122|gb|ACI34293.1| Glucosamine-6-phosphat ( 275) 748 189.3 3.5e-46 gi|125835344|ref|XP_684147.2| PREDICTED: similar t ( 277) 742 187.8 9.6e-46 gi|126291078|ref|XP_001378101.1| PREDICTED: simila ( 255) 738 186.8 1.8e-45 gi|47211913|emb|CAF94912.1| unnamed protein produc ( 263) 730 184.9 6.9e-45 gi|47222915|emb|CAF99071.1| unnamed protein produc ( 268) 723 183.2 2.3e-44 gi|126331194|ref|XP_001364124.1| PREDICTED: simila ( 289) 716 181.5 7.8e-44 >>gi|73974970|ref|XP_858814.1| PREDICTED: similar to glu (134 aa) initn: 817 init1: 817 opt: 817 Z-score: 1080.4 bits: 205.8 E(): 1.8e-51 Smith-Waterman score: 817; 95.455% identity (97.727% similar) in 132 aa overlap (18-149:3-134) 10 20 30 40 50 60 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILAN . : : .:::::::::::::::::::::::::::::::::::: gi|739 MCLCVCILLLKGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILAN 10 20 30 40 70 80 90 100 110 120 mKIAA4 AKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHMWTVSAFQ :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|739 AKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQ 50 60 70 80 90 100 130 140 mKIAA4 QHPRTIFVCDEDATLELRVKTVKYFKGEH ::::::::::::::::::::::::::::: gi|739 QHPRTIFVCDEDATLELRVKTVKYFKGEH 110 120 130 >>gi|73974968|ref|XP_858777.1| PREDICTED: similar to glu (259 aa) initn: 805 init1: 805 opt: 805 Z-score: 1060.6 bits: 203.1 E(): 2.3e-50 Smith-Waterman score: 805; 97.619% identity (99.206% similar) in 126 aa overlap (24-149:134-259) 10 20 30 40 50 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLA :. ::::::::::::::::::::::::::: gi|739 AHILDGNATDLQAECDAFEKKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLA 110 120 130 140 150 160 60 70 80 90 100 110 mKIAA4 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|739 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHM 170 180 190 200 210 220 120 130 140 mKIAA4 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH :::::::::::::::::::::::::::::::::::: gi|739 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH 230 240 250 >>gi|62089394|dbj|BAD93141.1| glucosamine-6-phosphate de (294 aa) initn: 805 init1: 805 opt: 805 Z-score: 1059.8 bits: 203.1 E(): 2.5e-50 Smith-Waterman score: 805; 97.619% identity (99.206% similar) in 126 aa overlap (24-149:169-294) 10 20 30 40 50 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLA :. ::::::::::::::::::::::::::: gi|620 AHILDGNAADLQAECDAFENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLA 140 150 160 170 180 190 60 70 80 90 100 110 mKIAA4 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|620 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHM 200 210 220 230 240 250 120 130 140 mKIAA4 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH :::::::::::::::::::::::::::::::::::: gi|620 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH 260 270 280 290 >>gi|73974966|ref|XP_858737.1| PREDICTED: similar to glu (151 aa) initn: 801 init1: 801 opt: 801 Z-score: 1058.7 bits: 201.9 E(): 2.9e-50 Smith-Waterman score: 801; 95.385% identity (97.692% similar) in 130 aa overlap (18-147:3-132) 10 20 30 40 50 60 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILAN . : : .:::::::::::::::::::::::::::::::::::: gi|739 MCLCVCILLLKGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILAN 10 20 30 40 70 80 90 100 110 120 mKIAA4 AKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHMWTVSAFQ :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|739 AKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQ 50 60 70 80 90 100 130 140 mKIAA4 QHPRTIFVCDEDATLELRVKTVKYFKGEH ::::::::::::::::::::::::::: gi|739 QHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLYSMKEGN 110 120 130 140 150 >>gi|148705856|gb|EDL37803.1| mCG10526, isoform CRA_b [M (312 aa) initn: 795 init1: 795 opt: 802 Z-score: 1055.5 bits: 202.4 E(): 4.4e-50 Smith-Waterman score: 802; 97.619% identity (98.413% similar) in 126 aa overlap (24-149:176-301) 10 20 30 40 50 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLA :. ::::::::::::::::::::::::::: gi|148 AHILDGNAADLQAECDAFEEKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLA 150 160 170 180 190 200 60 70 80 90 100 110 mKIAA4 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM 210 220 230 240 250 260 120 130 140 mKIAA4 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH :::::::::::::::::::::::::::::::::: : gi|148 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGYHSMKNYIKESQH 270 280 290 300 310 >>gi|81880421|sp|Q9CRC9.1|GNPI2_MOUSE RecName: Full=Gluc (276 aa) initn: 794 init1: 794 opt: 794 Z-score: 1045.8 bits: 200.4 E(): 1.5e-49 Smith-Waterman score: 794; 98.387% identity (99.194% similar) in 124 aa overlap (24-147:134-257) 10 20 30 40 50 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLA :. ::::::::::::::::::::::::::: gi|818 AHILDGNAADLQAECDAFEEKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLA 110 120 130 140 150 160 60 70 80 90 100 110 mKIAA4 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM 170 180 190 200 210 220 120 130 140 mKIAA4 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH :::::::::::::::::::::::::::::::::: gi|818 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLYSMKEGN 230 240 250 260 270 >>gi|74214311|dbj|BAE40396.1| unnamed protein product [M (276 aa) initn: 794 init1: 794 opt: 794 Z-score: 1045.8 bits: 200.4 E(): 1.5e-49 Smith-Waterman score: 794; 98.387% identity (99.194% similar) in 124 aa overlap (24-147:134-257) 10 20 30 40 50 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLA :. ::::::::::::::::::::::::::: gi|742 AHILDGNAADLQAECDAFEEKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLA 110 120 130 140 150 160 60 70 80 90 100 110 mKIAA4 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM 170 180 190 200 210 220 120 130 140 mKIAA4 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH :::::::::::::::::::::::::::::::::: gi|742 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLYSMKEGN 230 240 250 260 270 >>gi|21740309|emb|CAD39163.1| hypothetical protein [Homo (157 aa) initn: 789 init1: 789 opt: 789 Z-score: 1042.7 bits: 199.0 E(): 2.3e-49 Smith-Waterman score: 789; 97.581% identity (99.194% similar) in 124 aa overlap (24-147:15-138) 10 20 30 40 50 60 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILAN :. :::::::::::::::::::::::::::::::::: gi|217 AFENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILAN 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 AKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHMWTVSAFQ :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|217 AKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQ 60 70 80 90 100 110 130 140 mKIAA4 QHPRTIFVCDEDATLELRVKTVKYFKGEH ::::::::::::::::::::::::::: gi|217 QHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN 120 130 140 150 >>gi|194382120|dbj|BAG58815.1| unnamed protein product [ (206 aa) initn: 789 init1: 789 opt: 789 Z-score: 1041.0 bits: 199.1 E(): 2.8e-49 Smith-Waterman score: 789; 97.581% identity (99.194% similar) in 124 aa overlap (24-147:64-187) 10 20 30 40 50 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLA :. ::::::::::::::::::::::::::: gi|194 AHILDGNAADLQAECDAFENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLA 40 50 60 70 80 90 60 70 80 90 100 110 mKIAA4 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|194 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHM 100 110 120 130 140 150 120 130 140 mKIAA4 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH :::::::::::::::::::::::::::::::::: gi|194 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN 160 170 180 190 200 >>gi|37728262|gb|AAO49718.1| putative glucosamine-6-phos (242 aa) initn: 789 init1: 789 opt: 789 Z-score: 1040.0 bits: 199.2 E(): 3.2e-49 Smith-Waterman score: 789; 97.581% identity (99.194% similar) in 124 aa overlap (24-147:100-223) 10 20 30 40 50 mKIAA4 NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLA :. ::::::::::::::::::::::::::: gi|377 AHILDGNAADLQAECDAFENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLA 70 80 90 100 110 120 60 70 80 90 100 110 mKIAA4 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|377 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHM 130 140 150 160 170 180 120 130 140 mKIAA4 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH :::::::::::::::::::::::::::::::::: gi|377 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN 190 200 210 220 230 240 149 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 01:17:05 2009 done: Tue Mar 17 01:21:08 2009 Total Scan time: 587.250 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]