FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0201.ptfa, 570 aa vs ./tmplib.26680 library 1768447 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.5019+/-0.00622; mu= 8.9260+/- 0.415 mean_var=187.5564+/-44.316, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.0937 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4025 ( 930 res) mpg01178 ( 930) 1117 164 6.7e-41 >>mKIAA4025 ( 930 res) mpg01178 (930 aa) initn: 2039 init1: 1059 opt: 1117 Z-score: 826.7 bits: 163.6 E(): 6.7e-41 Smith-Waterman score: 2082; 55.420% identity (57.428% ungapped) in 572 aa overlap (1-570:377-930) 10 20 30 mKIAA0 ECFMNDKDVSGKMNRSQFEELCAELLQKIE :::::: :::: :::..: :.: .:: ..: mKIAA4 KIRALLRLSQECEKLKKLMSANASDLPLSIECFMNDIDVSGTMNRGKFLEMCDDLLARVE 350 360 370 380 390 400 40 50 60 70 80 90 mKIAA0 VPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCAL ::.:.. :..:: ::. :.::::::::::::::.:.:::::..::::::::::.::::: mKIAA4 PPLRSVLEQSKLKKEDIYAVEIVGGATRIPAVKEKISKFFGKELSTTLNADEAVTRGCAL 410 420 430 440 450 460 100 110 120 130 140 150 mKIAA0 QCAILSPAFKVREFSVTDAVPFPISLVWNHDSEETEGVHEVFSRNHAAPFSKVLTFLRRG :::::::::::::::.::.::.:::: :: .:: . ::: .:::::::::::: :. mKIAA4 QCAILSPAFKVREFSITDVVPYPISLRWNSPAEEGLSDCEVFPKNHAAPFSKVLTFYRKE 470 480 490 500 510 520 160 170 180 190 200 210 mKIAA0 PFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQKDGEKSRVKVKVRVNTHGIFTISTASMV :: :::.::.:: .:::. :..: ::.:. :.:: .:.::::::::.::::..:.:..: mKIAA4 PFTLEAYYSSPQDLPYPDPAIAQFSVQKVTPQSDGSSSKVKVKVRVNVHGIFSVSSAALV 530 540 550 560 570 580 220 230 240 250 260 270 mKIAA0 EKVPTEEEDGSSLEADMECPNQRPTESSDVDKNIQQDNSEAGTQPQVQTDGQQTSQSPPS : : ::. .:.:. : . :. .::.. : :. : :: :.: mKIAA4 E-VHKSEESEEPMETDQ---NAKEEEKMQVDQE------EPHTEEQ-----QQQPQTPAE 590 600 610 620 630 280 290 300 310 320 330 mKIAA0 PELTSEESKTPDADKANEKKVDQPPEAKKPKIKVVNVELPVEANLVWQLGRDLLNMYIET . ::: .: .: ...::.::::.::: :.:. .:.::.:..:.::: :..:..: :. mKIAA4 NKAESEEMETSQAG-SKDKKTDQPPQAKKAKVKTSTVDLPIESQLLWQLDREMLGLYTEN 640 650 660 670 680 690 340 350 360 370 380 390 mKIAA0 EGKMIMQDKLEKERNDAKNAVEECVYEFRDKLCGPYEKFICEQEHEKFLRLLTETEDWLY ::::::::::::::::::::::: :::.:::: : ::::. :.... : : .::.::: mKIAA4 EGKMIMQDKLEKERNDAKNAVEEYVYEMRDKLSGEYEKFVSEDDRNTFTLKLEDTENWLY 700 710 720 730 740 750 400 410 420 430 440 450 mKIAA0 EEGEDQAKQAYIDKLEELMKMGTPVKVRFQEAEERPKVLEELGQRLQHYAKIAADFRGKD :.:::: ::.:.::: :: ..: :.:.::::.:::::..::::...:.: :. ..:..:. mKIAA4 EDGEDQPKQVYVDKLAELKSLGQPIKTRFQESEERPKLFEELGKQIQQYMKVISSFKNKE 760 770 780 790 800 810 460 470 480 490 500 510 mKIAA0 EKYNHIDESEMKKVEKSVNEVMEWMNNVMNAQAKRSLDQDPVVRTHEIRAKVKELNNVCE ..:.:.: ... :::::.::.:::::. .: : :.:: ::::.:.::.::.:::...: mKIAA4 DQYEHLDAADVTKVEKSTNEAMEWMNSKLNLQNKQSLTVDPVVKTKEIEAKIKELTSICS 820 830 840 850 860 870 520 530 540 550 560 mKIAA0 PVVTQPKPKIESPKLERTPNGPNIDKKEDLEGKNNLGAEAPHQNGECHPNE--KGSVNMD :....::::.: :: : :. . . : .: : . : : :.. : .:: mKIAA4 PIISKPKPKVEPPKEE--PKHAEQNGPVDGQGDNPGSQAAEHGADTAVPSDGDKKLPEMD 880 890 900 910 920 570 mKIAA0 LD .: mKIAA4 ID 930 570 residues in 1 query sequences 1768447 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:14:27 2006 done: Mon Mar 27 10:14:28 2006 Scan time: 0.760 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]