FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4035.ptfa, 512 aa
 vs ./tmplib.26680 library

1768505 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 13.3410+/-0.00772; mu= -25.0291+/- 0.505
 mean_var=473.8219+/-118.816, 0's: 0 Z-trim: 5  B-trim: 135 in 1/35
 Lambda= 0.0589

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0240  ( 932 res)   mbg05468                   ( 932)  449   52 1.9e-07


>>mKIAA0240  ( 932 res)   mbg05468                        (932 aa)
 initn: 424 init1: 397 opt: 449  Z-score: 225.9  bits: 52.2 E(): 1.9e-07
Smith-Waterman score: 449;  47.093% identity (48.795% ungapped) in 172 aa overlap (15-182:545-714)

                               10        20         30        40   
mKIAA4                 PFLLPQYDSKLCSLKKQPLL-QPSKEACFLEHLHKHQGSVLHPD
                                     .:.:   : .: : .:..:.. :. .. ::
mKIAA0 ATLGATQAQPESSVGSSPSQTAVQVDSHPGQKRPAAKQLTKGAFILQQLQRDQAHAVTPD
          520       530       540       550       560       570    

            50        60        70        80        90       100   
mKIAA4 YKTAFPSFEDALHRLLPYHVYQGALPSPNDYHKVDEEFETVSTQLLKRTQAMLNKYRLLL
        :. : :..:...::: ::: ::..:. .: ..::.::: :.:::::::::::::::.::
mKIAA0 -KSQFRSLNDTVQRLLSYHVCQGSMPTEEDLRQVDNEFEEVATQLLKRTQAMLNKYRFLL
           580       590       600       610       620       630   

           110       120       130       140          150       160
mKIAA4 LEESRRVSPSAEMVMIDRMFIQEEKTTLALDKQLAKEKPDEYVSS---SRSLGFPVPVSS
       ::.. :..:::::::::::: :::...:. ::.::   :. . ..   : .:   ::  .
mKIAA0 LEDAMRINPSAEMVMIDRMFNQEERASLSRDKRLALVDPEGFQADFCCSFKLDEAVP-ET
           640       650       660       670       680       690   

              170       180       190       200       210       220
mKIAA4 EGHRLPSHGQSSSSSTSGTSAQPPPHLPTKLVIRHGGAGGSPSVTWARASSSLSSTSSSS
          :  .: ...::  .   ::                                      
mKIAA0 PLDRSDQHRSKTSSLHQVPRAQSRDRAKPGMAEATNHDQFHLVPNHIVVSAEGNISKKSE
            700       710       720       730       740       750  




512 residues in 1 query   sequences
1768505 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:49 2006 done: Mon Mar 27 10:59:50 2006
 Scan time:  0.710 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]