FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4017.ptfa, 340 aa
 vs ./tmplib.26680 library

1768677 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.7691+/-0.00704; mu= -4.2442+/- 0.467
 mean_var=249.9846+/-58.377, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0811

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0140  ( 439 res)   mbh04602                   ( 439)  537   75 7.9e-15


>>mKIAA0140  ( 439 res)   mbh04602                        (439 aa)
 initn: 497 init1: 272 opt: 537  Z-score: 358.6  bits: 75.1 E(): 7.9e-15
Smith-Waterman score: 537;  35.370% identity (37.801% ungapped) in 311 aa overlap (20-318:18-320)

               10        20        30        40        50        60
mKIAA4 CPVFWKSSAHRCGLRKSPAMVTLITEKLQNQSLDDLTRRACEAGPYSAEKLNKSGHLFPL
                          :: .. ..: ::. :. ..:.       . :....  :.  
mKIAA0   RWPVPSLGCSPVPEVLTMVMILRRSLINQGADSGAHRTF-IPELHTPKMSQGPTLLSC
                 10        20        30         40        50       

               70         80        90       100       110         
mKIAA4 EISVDKSPWKALRGGWPTG-SQAASGPFSVGPHGVSHTEGLKWQLESPGPMDVGHF---L
        : .... :. :    :   .: ... .   :.  .  .:  :. :.     :  .   :
mKIAA0 GI-MENDRWRDLDRKCPLQIDQPSASIWECLPEKCQ--DGSLWHQEAVTACAVTSLIKDL
         60        70        80        90         100       110    

        120       130       140       150       160       170      
mKIAA4 DLHDSTGPPAAPPTKRHCRSLSEPEELARCRSPWRPGSSKVWTPISKRRCNSGGSATLQC
       ...: .: :.:::.::.:::::  .:.. ::. ::: .::::::. :::: ::::.  . 
mKIAA0 NINDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQ-RY
          120       130       140       150       160       170    

        180       190       200         210       220       230    
mKIAA4 CSGVGNPTLQGTLVPGLPRRPVSPAGPT--SPLTPRPASASSGFVDGSEGSTSSGPPWLS
        .:: .: .: .   .:: :  . ..:   : :  : ..     . ::    ..:  : :
mKIAA0 SNGV-SP-MQRSSSFSLPARANGLSSPCHQSSLHHRFGGQPCQGAPGSAPCGQAGDSW-S
             180       190       200       210       220        230

          240            250       260       270        280        
mKIAA4 TGPCPFSS-----RRRLSLSQEHLVDTGACLPSASSTPTSTPELGRHH-GLLRCRSQPCV
         : : ..     .: :: :.:..     : :::.:::.:::::.:.  :: : ::::::
mKIAA0 PDPHPVGGGRLDLQRSLSCSHEQFSFPEYCPPSANSTPASTPELARRSSGLARSRSQPCV
              240       250       260       270       280       290

      290       300       310       320       330       340        
mKIAA4 LDGRRVRRKRRREEDARWTRPSLDFLKMTRVRPHLCSWVLRKPVFCLILVLE        
       :. ...  :::: ....  :::::. ::..                              
mKIAA0 LNDKKIGVKRRRPDEVQEQRPSLDLAKMAQNCQTFSSLSCLNMGVDDHSSQSPFALVSST
              300       310       320       330       340       350




340 residues in 1 query   sequences
1768677 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:19 2006 done: Mon Mar 27 10:59:20 2006
 Scan time:  0.560 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]