FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0446.ptfa, 339 aa
 vs ./tmplib.26680 library

1768678 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.5983+/-0.00374; mu= 18.3901+/- 0.251
 mean_var=63.8682+/-14.555, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1605

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1896  ( 515 res)   mbg05882a                  ( 515)  259   69 7.6e-13


>>mKIAA1896  ( 515 res)   mbg05882a                       (515 aa)
 initn: 227 init1:  98 opt: 259  Z-score: 323.0  bits: 68.8 E(): 7.6e-13
Smith-Waterman score: 322;  24.080% identity (27.170% ungapped) in 299 aa overlap (37-325:233-507)

         10        20        30        40        50        60      
mKIAA0 MPGDSELAVQEPDRRSPGTMEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLI
                                     :.::      : : .   . :. . :.  .
mKIAA1 YWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHL------VAGGGAGAVSRTCTAPLDRL
            210       220       230             240       250      

         70        80        90       100       110        120     
mKIAA0 RTRLQVQKGKSLYHGTFDAFVKILRADGVAGLYRGFLVNTFTLIS-GQCYVTTYELTRKF
       .. .::. ..:       .:....:  :. .:.::  .:.. .   .     .::  ...
mKIAA1 KVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRL
        260       270       280       290       300       310      

         130        140       150       160       170       180    
mKIAA0 VADYSQSNTV-KSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVHGNLEGQG
       :.. ...  . . ::::. :. .:::   :..:.. .. ... :      :  : :    
mKIAA1 VGSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTG------QYSGML----
        320       330       340       350       360                

          190       200       210       220       230        240   
mKIAA0 VIAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYH-FYAEQLSRLCPQE
               :  :.::  .:. .::.::. ..:  :: ...    :. .    :.:   . 
mKIAA1 --------DCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNS
                370       380       390       400       410        

            250       260       270           280         290      
mKIAA0 C-PHIVFQAISGPLAAATASILTNPMDVIRTRVQ----VEGKSSIVLT--FRQLMAEEGP
         : .      : .... ... . :. ..:::.:    .::   ....  :.:..  :: 
mKIAA1 ADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKQILRTEGA
      420       430       440       450       460       470        

        300       310       320       330         
mKIAA0 WGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW
       .::..::.  .... :.. .  : ::.::              
mKIAA1 FGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQSR      
      480       490       500       510           




339 residues in 1 query   sequences
1768678 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:20:59 2006 done: Mon Mar 27 10:21:00 2006
 Scan time:  0.550 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]