FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0281.ptfa, 741 aa
 vs ./tmplib.26680 library

1768276 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.0698+/-0.00471; mu= 14.6178+/- 0.315
 mean_var=102.5023+/-22.765, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1267

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1834  ( 468 res)   mbg00394                   ( 468) 2558  478 7.5e-136


>>mKIAA1834  ( 468 res)   mbg00394                        (468 aa)
 initn: 2141 init1: 2141 opt: 2558  Z-score: 2531.4  bits: 478.4 E(): 7.5e-136
Smith-Waterman score: 2558;  80.430% identity (80.603% ungapped) in 465 aa overlap (275-738:1-465)

          250       260       270       280       290       300    
mKIAA0 HLQGTDQEIQTYTIAVINALFLKAPDERRQEMANILAQKQLRYIILTHVIRAQRAINNEM
                                     .::: .:::.:: :::.::::..: :..::
mKIAA1                               DMANAFAQKHLRSIILNHVIRGNRPIKTEM
                                             10        20        30

          310       320       330       340       350        360   
mKIAA0 AHQLYVLQVLTFNLLEDRMMTKMDPQDQAQRDIIFELRRIAFDAESEPNNSSGS-MEKRK
       ::::::::::::::::.::::::::.::::::::::::::::::::.:.:  ::  ::::
mKIAA1 AHQLYVLQVLTFNLLEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNVPGSGTEKRK
               40        50        60        70        80        90

           370       380       390       400       410       420   
mKIAA0 SMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKH
       .:::.::: ::: ::.:::.:::::::::::::::::.:: :::.:::::::::::::::
mKIAA1 AMYTKDYKMLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH
              100       110       120       130       140       150

           430       440       450       460       470       480   
mKIAA0 ECPFGRSSIELTKMLCEILKVGELPSETCNDFHPMFFTHDRSFEEFFCICIQLLNKTWKE
       :::::::.:::::::::::.:::::.:  ::.:::::::::.:::.: ::::::::::::
mKIAA1 ECPFGRSAIELTKMLCEILQVGELPNEGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKE
              160       170       180       190       200       210

           490       500       510       520       530       540   
mKIAA0 MRATSEDFNKVMQVVKEQVMRALTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNQEDFQ
       ::::.::::::::::.::. ::: .::.:::::::::..:::.:::..::::::.:.:::
mKIAA1 MRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSEILRLRQSERMSQDDFQ
              220       230       240       250       260       270

           550       560       570       580       590       600   
mKIAA0 SRPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYG
       : ::.::.::::::::::::::::::: ::. :::.. ::::..::.:::. ::::::::
mKIAA1 SPPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNRRRQERFWHCRLALNHKVLHYG
              280       290       300       310       320       330

           610       620       630       640       650       660   
mKIAA0 DLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSN
       ::...:::::  .:::.:.:::::::.::::::::::::.:::::::::::::::::: .
mKIAA1 DLDDNPQGEVTFESLQEKVPVADIKAIVTGKDCPHMKEKSALKQNKEVLELAFSILYDPD
              340       350       360       370       380       390

           670       680       690       700       710       720   
mKIAA0 CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEIKLRLLDLENIQIPDA
         ::::::.:.::::: :::.::::::: :.::..:::::::::.:::::::::::::.:
mKIAA1 ETLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIPEA
              400       410       420       430       440       450

           730       740 
mKIAA0 PPPIPKEPSNYDFVYDCN
       :::.:::::.:::::   
mKIAA1 PPPVPKEPSSYDFVYHYG
              460        




741 residues in 1 query   sequences
1768276 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:26 2006 done: Mon Mar 27 10:16:27 2006
 Scan time:  0.810 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]