FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0512.ptfa, 832 aa
 vs ./tmplib.26680 library

1768185 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 11.8059+/- 0.009; mu= -17.2083+/- 0.592
 mean_var=496.1243+/-123.880, 0's: 0 Z-trim: 11  B-trim: 136 in 1/35
 Lambda= 0.0576

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0443  ( 1350 res)   mbg01420                  (1350)  351   44  0.0001


>>mKIAA0443  ( 1350 res)   mbg01420                       (1350 aa)
 initn: 385 init1: 318 opt: 351  Z-score: 177.1  bits: 44.5 E(): 0.0001
Smith-Waterman score: 351;  25.830% identity (26.022% ungapped) in 271 aa overlap (518-786:1037-1307)

       490       500       510       520       530        540      
mKIAA0 KNRSGGKGKNRKNKVDVDELGMGFRPGDGAAAAAAASANGGQAFLAEI-PESEEGESGWT
                                     ::.  :   ::.  :.:. :: :   .   
mKIAA0 SWDEVTVQFKAGPWGKAGFPPMNPFRFPKEAASLFAEMFGGKPKLVEVGPEREPEPQFPF
       1010      1020      1030      1040      1050      1060      

        550       560        570       580       590       600     
mKIAA0 DTESDSDSEPDVPQRGKGKRTI-PMHKRPFPYEIDEILGVRDLRKVLALLQKSDDPFIQQ
       . . .  :  .. .. :....  : .      . .  .: ......: :.... ::::..
mKIAA0 QYDPSYRSVREIREHLKARESAQPENWSCNCIQCELRIGSEEFEELLLLMDRNRDPFIHE
       1070      1080      1090      1100      1110      1120      

         610       620       630       640       650       660     
mKIAA0 VALLTLSNNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQGRL
       .. ....  .  . ... ::. : . .:  ..:  . ... . :  :  ..  : . . .
mKIAA0 ISKIAMGMRGASQFTRDFIRNSGVVSLIEALLNYPSSRVRTRFLENMVRMAPPYPDLNMI
       1130      1140      1150      1160      1170      1180      

         670       680       690       700       710       720     
mKIAA0 QVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIK
       ..:. .. .: .  .:.:  :. :: ..:..: :.::....:: .:.:: ::..:. : .
mKIAA0 ETYVCQICEDTFDYDLDSPDQLSGLTMITHLTATSDYHKVVVNYLAGFFYLLNSGNTKTR
       1190      1200      1210      1220      1230      1240      

         730       740       750       760       770       780     
mKIAA0 VEILKILSNFAENPDMLKKLLGTQVPSSFSSLYNSYVESEILINALTLFEIIFDNLRAEV
        ..::.: :..::  : :.:: :.  : : .: :    .: .  .:..:: :  ... :.
mKIAA0 FHVLKLLLNLSENLVMTKRLLVTDSVSEFMDLINREESDENIQIVLAIFETISKHIQKEA
       1250      1260      1270      1280      1290      1300      

         790       800       810       820       830  
mKIAA0 FNYREFNKGSLFYLCTTSGVCVKKIRALANHHDLLVKVKVIKLVNKF
       .                                              
mKIAA0 LFSDDDDDDEEEDAVNLEPFISAFREAEKIAKELKRKPGNQKAP   
       1310      1320      1330      1340      1350   




832 residues in 1 query   sequences
1768185 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:22:01 2006 done: Mon Mar 27 10:22:02 2006
 Scan time:  0.970 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]