FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0271.ptfa, 192 aa
 vs ./tmplib.26680 library

1768825 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.9931+/-0.0036; mu= 15.2194+/- 0.241
 mean_var=68.6340+/-15.614, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1548

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4133  ( 584 res)   mej01561                   ( 584)  120   35  0.0056


>>mKIAA4133  ( 584 res)   mej01561                        (584 aa)
 initn:  38 init1:  38 opt: 120  Z-score: 145.8  bits: 35.3 E(): 0.0056
Smith-Waterman score: 120;  32.258% identity (33.333% ungapped) in 93 aa overlap (41-133:44-133)

               20        30        40        50        60        70
mKIAA0 TRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAAQLH
                                     .: :...    :.:  .::   :::. .: 
mKIAA4 LYKTNDEVIHSIFKAYIQRLLHALARHCQLEPDHEGVPEETDDF-GEFRMRVSDLVKDLI
            20        30        40        50         60        70  

               80        90       100       110       120       130
mKIAA0 VTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQDWMVAY
          :: .  :.:. . : .:.: :    : . . ::. :.::. : .: . .: . .:  
mKIAA4 FLIGSMEC-FAQLYSTLKEGNPPWEVTEAVLFIMAAI-AKSVDPENNPTLVEVLEGVVHL
             80         90       100        110       120       130

              140       150       160       170       180       190
mKIAA0 LETRLADWIHSSGGWAEFTALYGDGALEEARRLREGNWASVRTVLTGAVALGALVTVGAF
        ::                                                         
mKIAA4 PETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSV
              140       150       160       170       180       190




192 residues in 1 query   sequences
1768825 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:14 2006 done: Mon Mar 27 10:16:14 2006
 Scan time:  0.390 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]