FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4114.ptfa, 674 aa
 vs ./tmplib.26680 library

1768343 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.6762+/-0.00624; mu= 2.2809+/- 0.415
 mean_var=205.2642+/-48.126, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0895

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0656  ( 608 res)   mbg00689                   ( 608)  450   71 3.9e-13


>>mKIAA0656  ( 608 res)   mbg00689                        (608 aa)
 initn: 420 init1: 314 opt: 450  Z-score: 328.2  bits: 70.9 E(): 3.9e-13
Smith-Waterman score: 499;  34.302% identity (40.550% ungapped) in 344 aa overlap (371-671:246-579)

              350       360       370       380       390          
mKIAA4 REKQAALEEEQARLKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTA---PAIDIFS
                                     :. ..:.. ..:::..  ::   ::.:::.
mKIAA0 VTPTASTAPPVPATAPSPAPTAVAATAATTTAAAAATTTATTSAAAATTAAAPPALDIFG
         220       230       240       250       260       270     

        400       410       420            430       440        450
mKIAA4 TP-SSSNSTSKLPNDLLDLQQPTFHPSV-----HAMSAAPQGASTWGDP-FSATLDAVED
          .:.  ..  :       .:   ::.      :.:. :.:::   .  ..: : .:. 
mKIAA0 DLFDSAPEVAAAP-------KPDAAPSIDLFGTDAFSSPPRGASPVPESSLTADLLSVDA
         280              290       300       310       320        

                   460          470              480       490     
mKIAA4 -AIPS----LNPFLTKSSGDVHL---PIASDVS-------TFTTRTPTHEMFVGFSPS--
        : ::     .:  ..::: . :    ..: .:       . .. . . ....::. :  
mKIAA0 FAAPSPASTASPAKAESSGVIDLFGDAFGSGASETQPAPQAVSSSSASADLLAGFGGSFM
      330       340       350       360       370       380        

            500          510          520       530       540      
mKIAA4 -PVAQPHSSAGLNV---DFESVFG---NKSTNVAVDSGGGLLKPTVASQNQSLPVAKLPP
        : . : . :  :.   .::..::   . :.. . : .: :: ::.: ..:  ::. .::
mKIAA0 APSTTPVTPAQNNLLQPSFEAAFGTTPSTSSSSSFDPSGDLLMPTMAPSGQPAPVSMVPP
      390       400       410       420       430       440        

              550       560        570       580       590         
mKIAA4 N------KLVSDDLDSSLANLVGNLGI-GNGTTKNDVSWSQPGEKKLTGGSNWQPKVAPT
       .      : ...:::::::.::::::: :. . :.:..:.  ::::::::.::::::.:.
mKIAA0 SPAMAASKGLGSDLDSSLASLVGNLGISGTTSKKGDLQWNA-GEKKLTGGANWQPKVTPA
      450       460       470       480        490       500       

     600       610         620       630       640       650       
mKIAA4 TAWSAATMNGMHFPQYA--PPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVM
       : :::..      :  .  ::  . :..   :  :.:.::.  .. .:.:  ....::.:
mKIAA0 T-WSAGVPPQGTVPPTSSVPPGAGAPSVGQPGA-GFGMPPSGTGMTMMSQQPVMFAQPMM
        510       520       530        540       550       560     

       660       670                              
mKIAA4 RPPNPFGPVSGAQIQFM                          
       :::   . : :.:..                            
mKIAA0 RPPFGAAAVPGTQLSPSPTPATQSPKKPPAKDPLADLNIKDFL
         570       580       590       600        




674 residues in 1 query   sequences
1768343 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:02:18 2006 done: Mon Mar 27 11:02:19 2006
 Scan time:  0.800 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]