FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1613.ptfa, 797 aa
 vs ./tmplib.26680 library

1768220 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.6306+/-0.00411; mu= 21.5297+/- 0.275
 mean_var=74.0658+/-16.786, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1490

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0245  ( 352 res)   mpm02214                   ( 352)  144   41 0.00034


>>mKIAA0245  ( 352 res)   mpm02214                        (352 aa)
 initn:  70 init1:  70 opt: 144  Z-score: 167.6  bits: 40.7 E(): 0.00034
Smith-Waterman score: 144;  21.762% identity (22.105% ungapped) in 193 aa overlap (272-462:63-254)

             250       260       270        280        290         
mKIAA1 VLNVLNLAVWVFIMIAGLFFINGKYWAEGQFLPHGWS-GVLQGAA-TCFYAFIGFDIIAT
                                     :   .:. : :. :  . .... :.: .  
mKIAA0 FFTFLLSPFSFAWSPTRLCPTGHTEHFQDAFKGSSWNVGDLSLALYSALFSYSGWDTLNF
             40        50        60        70        80        90  

     300       310       320       330       340       350         
mKIAA1 TGEEAKNPNTSIPYAITASLVICLTAYVSVSMILTLMVPYYAIDTESPLMEMFVAHGFYA
       . :: :::. ..: ::  :. :    :. ...    ..    .   . .   :. . :  
mKIAA0 VTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNIQDVHKSDAVAVTFADQTFGM
            100       110       120       130       140       150  

     360       370       380       390       400       410         
mKIAA1 AKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGF
        .... :. . .   .: .:.:   :.... . .: :  .:. .     ::: : . .  
mKIAA0 FSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPNLLSMIHIERFTPVPALLFNCT
            160       170       180       190       200       210  

     420       430       440       450       460       470         
mKIAA1 LAALLSLLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKE
       .. .  .. ..  ::...:..  .   :  :  : ::.. : :                 
mKIAA0 MTLIYLVVKDVFLLINYFSFSYWFFVGLSVVGQLYLRWK-EPDWPRPLKLSLFFPIVFCV
            220       230       240       250        260       270 

     480       490       500       510       520       530         
mKIAA1 GILADCEKETCSPVSEGEEFSSPATNTCGAKNLPSLGDNEMLIGKSDKSAYNVNHPNYGT
                                                                   
mKIAA0 CSLFLVAVPLFSDTINSLIGIGIALSGVPVYFLGVYLPESRRPLFIRNVLATVTRVTQKL
             280       290       300       310       320       330 




797 residues in 1 query   sequences
1768220 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:49:33 2006 done: Mon Mar 27 10:49:34 2006
 Scan time:  0.900 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]