FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1731.ptfa, 1099 aa
 vs ./tmplib.26680 library

1767918 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.8579+/-0.00646; mu= 3.9721+/- 0.429
 mean_var=226.6332+/-53.311, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.0852

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4026  ( 986 res)   mbg12171                   ( 986)  208   39  0.0035


>>mKIAA4026  ( 986 res)   mbg12171                        (986 aa)
 initn: 154 init1:  76 opt: 208  Z-score: 149.5  bits: 39.3 E(): 0.0035
Smith-Waterman score: 208;  22.830% identity (24.739% ungapped) in 311 aa overlap (180-477:655-954)

     150       160       170       180       190       200         
mKIAA1 YYKAGTGREQAMAVSPPATAVAQSSVLLHPQEEAVRIRMSLRRKQIMEIEEQKQKQLELL
                                     .::: :::.   :      :. :: . :. 
mKIAA4 KKFYDVELENLERQQKQQVEKMEQDHSVRRKEEAKRIRLEQDRDYAKFQEQLKQMKKEVK
          630       640       650       660       670       680    

     210       220       230          240         250       260    
mKIAA1 EQIEQQKLRLETDCFRAQLEE--QRKQA-DQPEVCCAP--MSHAMISDEDSHRQMIRNYQ
        ..:.   . . . .. ..::  :.::  :.  :      .  :: .    .:. : . .
mKIAA4 SEVEKLPRQQRKESMKQKMEEHSQKKQRLDRDFVAKQKEDLELAMRKLTTENRREICDKE
          690       700       710       720       730       740    

          270       280       290       300       310       320    
mKIAA1 HQLLQQNRLHKETVETARKRLLEYQTVLKERSPSLSASALVPDSVVSGPPQQSYKPAAAS
       .. :....   .  :.:  .. :.:  :.::  .:  . :  .  ..       .     
mKIAA4 RDCLSKKQELLRDREAALWEMEEHQ--LQERH-QLVKQQLKDQYFLQRHDLLRKHEKERE
          750       760         770        780       790       800 

          330       340       350       360       370       380    
mKIAA1 DSWDPSQRLKLSPSKYQPVQPSQIPALEQSHIQTGFSSFKASLRLPSCVSLPSADSGITQ
       .    .::.  . .  :  . ...: ...:  .: .. .: ::.. .  :       : :
mKIAA4 QMQRYNQRMMEQLKVRQQQEKARLPKIQRSDGKTRMAMYKKSLHINGAGSASEQREKIKQ
             810       820       830       840       850       860 

          390       400       410       420       430         440  
mKIAA1 HPLSTESDSKVKSSHLQIPELQHRLSKISQLIPPQQDSLKALQEQLATQREAII--HSRQ
         .: . ... :. .::  . :.. ... ...   ..... :: :: ...  ..  :  :
mKIAA4 --FSQQEEKRQKAERLQ--QQQKHENQMRDMVAQCESNMSELQ-QLQNEKCHLLVEHETQ
               870         880       890       900        910      

                  450       460       470       480       490      
mKIAA1 ------EAHEETLREWKEKIFPEQARNPTDENDLEMQKREQLGGWFPHTQGLTWGDAGQG
             :.:...:.::..:. :   :. . :.::...::::                   
mKIAA4 KLKALDESHNQSLKEWRDKLRP---RKKALEEDLNQKKREQEMFFKLSEEAEPRPTTPSK
        920       930          940       950       960       970   

        500       510       520       530       540       550      
mKIAA1 SANGEQPRADVHAEHNGESLAKELSGRASKPPVSKVKCVLDLNQHELSTIQEVESPASGR
                                                                   
mKIAA4 ASNFFPYSSGDAS                                               
           980                                                     




1099 residues in 1 query   sequences
1767918 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:51:53 2006 done: Mon Mar 27 10:51:54 2006
 Scan time:  1.100 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]