FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1846.ptfa, 683 aa
 vs ./tmplib.26680 library

1768334 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.2382+/-0.00437; mu= 18.8850+/- 0.294
 mean_var=83.8423+/-18.357, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1401

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0631  ( 724 res)   mbj00361                   ( 724)  156   42 0.00028


>>mKIAA0631  ( 724 res)   mbj00361                        (724 aa)
 initn: 135 init1:  87 opt: 156  Z-score: 169.3  bits: 41.8 E(): 0.00028
Smith-Waterman score: 190;  21.200% identity (25.666% ungapped) in 500 aa overlap (134-576:132-601)

           110       120       130       140       150       160   
mKIAA1 VSVNCLDQHVQKSPETIALIWERDEPGTEVRITYRELLETTCRLANTLKRHGVHRGDRVA
                                     ::.: .    . ..:. . . :..:.  ::
mKIAA0 PYTVHQMFYEALDKYGNLSALGFKRKDKWERISYYQYYLIARKVAKGFLKLGLERAHSVA
             110       120       130       140       150       160 

           170       180       190       200       210       220   
mKIAA1 IYMPVSPLAVAAMLACARIGAIHTVVFAGFSAESLAGRINDAKCKAVITFNQGLRGGRVV
       :    ::    . .. .  :.: : ...  : :.     .: . ..... .:        
mKIAA0 ILGFNSPEWFFSAVGTVFAGGIVTGIYTTSSPEACQYISHDCRANVIVVDTQK-------
             170       180       190       200       210           

           230       240       250           260       270         
mKIAA1 ELKKIVDEAVKSCPTVQHVLVAHRTDTK--VPMGSLD--IPLEQEMAKEAPVCTPESMSS
       .:.::. .  :. : .. :.. ..   :  . . ...  : : ::. .::     .... 
mKIAA0 QLEKIL-KIWKDLPHLKAVVIYQEPPPKKMANVYTMEELIELGQEVPEEALDAIIDTQQP
          220        230       240       250       260       270   

     280       290                   300       310       320       
mKIAA1 EDMLFMLYTSGSTGTPKGLV------------HTQAGYLLYAAMTHKLVFDYQP-----G
       ..   ..::::.::.:::..             .::: .  : . ...: .: :     .
mKIAA0 NQCCVLVYTSGTTGNPKGVMLSQDNITWIARYGSQAGDIQPAEVQQEVVVSYLPLSHIAA
           280       290       300       310       320       330   

            330       340       350        360       370       380 
mKIAA1 DVFGCVADIGWITGHSYVVYGPLCNGATTVLFESTPV-YPDAGRYWETVQRLKINQFYGA
       ...   . : : .   ..    : .  ...: :  :. .  . : :: ... .:..  . 
mKIAA0 QIYDLWTGIQWGAQVCFADPDALKGTLVNTLREVEPTSHMGVPRVWEKIME-RIQEVAAQ
           340       350       360       370       380        390  

               390       400        410       420            430   
mKIAA1 PTAVR--LLLKYGDAWVKKYD-RSSLRTLGSVGEPINHEAWEWL-----HKVVGDGRCTL
          .:  .::     :. .   ...:   ..  .:.. .  ..:     ....: ..:  
mKIAA0 SGFIRRKMLL-----WAMSVTLEQNLTCPSNDLKPFTSRLADYLVLARVRQALGFAKC--
            400            410       420       430       440       

           440       450       460         470                     
mKIAA1 VDTWWQTETGGICIAPRPSEDGAEILPGMAMRPF--FGIV----PVLMDE--------KG
            : .  :   ::  .:    .: :. .: .  .:.     : .:.         .:
mKIAA0 -----QKNFYGA--APMTAETQRFFL-GLNIRLYAGYGLSESTGPHFMSSPYNYRLYSSG
              450         460        470       480       490       

     480                490       500       510         520        
mKIAA1 NVLEG---------GDVSGALCISQAWPGMARTIYGDHQRFVDAYFRAY--PGYYFTGDG
        :. :         .:  : .:.   :   .:::.  .  . :   .:    :.  ::: 
mKIAA0 RVVPGCRVKLVNQDADGIGEICL---W---GRTIFMGYLNMEDKTCEAIDSEGWLHTGDM
       500       510       520             530       540       550 

      530       540        550       560        570       580      
mKIAA1 AHRTEGGYYQITGRMDD-VINISGHRLGTAEIEDAMA-DHPAVPETAVIGYPHDIKGEAA
       ..    :.  ::::. . .:. .:. .  . ::.:.  . : .  . .::          
mKIAA0 GRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKMELPIISSAMLIGDQRKFLSMLL
             560       570       580       590       600       610 

        590       600       610       620       630       640      
mKIAA1 FAFIVLKDNISDENMVVNELKLSVATKIAKYAVPDQILVVKRLPKTRSGKVMRRLLRKII
                                                                   
mKIAA0 TLKCTLDPETSEPTDSLTEQAVEFCQRVGSKASTVSEIVGQRDEAVYQAIHEGIQRVNAN
             620       630       640       650       660       670 




683 residues in 1 query   sequences
1768334 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:54:21 2006 done: Mon Mar 27 10:54:22 2006
 Scan time:  0.840 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]