# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj70377.fasta.nr -Q ../query/mKIAA4216.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4216, 906 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919085 sequences Expectation_n fit: rho(ln(x))= 5.4016+/-0.000185; mu= 12.7115+/- 0.010 mean_var=83.6202+/-16.273, 0's: 36 Z-trim: 50 B-trim: 0 in 0/66 Lambda= 0.140255 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|76880494|ref|NP_035798.2| ubiquitin protein lig ( 870) 5679 1159.6 0 gi|76880500|ref|NP_001029134.1| ubiquitin protein ( 849) 5584 1140.3 0 gi|2262222|gb|AAB63361.1| E6-AP ubiquitin protein ( 869) 5565 1136.5 0 gi|6647866|sp|O08759.1|UBE3A_MOUSE RecName: Full=U ( 885) 5565 1136.5 0 gi|3978458|gb|AAC83345.1| E6-AP ubiquitin protein ( 849) 5455 1114.2 0 gi|1843535|gb|AAB47756.1| E6-AP ubiquitin-protein ( 849) 5454 1114.0 0 gi|119578049|gb|EAW57645.1| ubiquitin protein liga ( 872) 5451 1113.4 0 gi|215274240|sp|Q05086.4|UBE3A_HUMAN RecName: Full ( 875) 5450 1113.2 0 gi|114655965|ref|XP_510256.2| PREDICTED: ubiquitin ( 879) 5450 1113.2 0 gi|109458840|ref|XP_341868.3| PREDICTED: similar t ( 847) 5449 1113.0 0 gi|109080398|ref|XP_001108562.1| PREDICTED: simila ( 910) 5449 1113.0 0 gi|109080396|ref|XP_001108661.1| PREDICTED: simila ( 872) 5445 1112.2 0 gi|109080402|ref|XP_001108510.1| PREDICTED: simila ( 879) 5444 1112.0 0 gi|37589039|gb|AAH02582.2| Ubiquitin protein ligas ( 872) 5442 1111.6 0 gi|73950952|ref|XP_848240.1| PREDICTED: similar to ( 875) 5441 1111.4 0 gi|134025159|gb|AAI34679.1| UBE3A protein [Bos tau ( 875) 5416 1106.4 0 gi|11385658|gb|AAG34910.1|AF273050_1 CTCL tumor an ( 852) 5387 1100.5 0 gi|1495430|emb|CAA66655.1| E6-AP [Homo sapiens] ( 852) 5378 1098.7 0 gi|126337181|ref|XP_001367414.1| PREDICTED: simila ( 878) 5367 1096.4 0 gi|55732392|emb|CAH92897.1| hypothetical protein [ ( 852) 5360 1095.0 0 gi|73950950|ref|XP_855644.1| PREDICTED: similar to ( 854) 5356 1094.2 0 gi|194206373|ref|XP_001917206.1| PREDICTED: ubiqui ( 876) 5347 1092.4 0 gi|55416028|dbj|BAD69554.1| ubiquitin ligase E3A i ( 852) 5341 1091.2 0 gi|27924420|gb|AAH45002.1| Ube3a-prov protein [Xen ( 908) 5146 1051.7 0 gi|45709750|gb|AAH67999.1| Ubiquitin protein ligas ( 856) 5127 1047.9 0 gi|109080406|ref|XP_001108450.1| PREDICTED: simila ( 813) 5101 1042.6 0 gi|67972166|dbj|BAE02425.1| unnamed protein produc ( 813) 5080 1038.3 0 gi|26325120|dbj|BAC26314.1| unnamed protein produc ( 762) 5011 1024.4 0 gi|47226776|emb|CAG06618.1| unnamed protein produc ( 865) 4883 998.5 0 gi|114655979|ref|XP_001160706.1| PREDICTED: ubiqui ( 785) 4878 997.5 0 gi|55250378|gb|AAH85646.1| Zgc:92173 [Danio rerio] ( 857) 4833 988.4 0 gi|73950956|ref|XP_536163.2| PREDICTED: similar to ( 765) 4795 980.7 0 gi|224042994|ref|XP_002197223.1| PREDICTED: ubiqui ( 880) 4728 967.1 0 gi|50730394|ref|XP_416882.1| PREDICTED: similar to ( 880) 4722 965.9 0 gi|114655967|ref|XP_001160788.1| PREDICTED: ubiqui ( 820) 4385 897.7 0 gi|109080404|ref|XP_001108278.1| PREDICTED: simila ( 820) 4379 896.5 0 gi|73950954|ref|XP_855701.1| PREDICTED: similar to ( 823) 4375 895.7 0 gi|160773749|gb|AAI55157.1| Zgc:92173 protein [Dan ( 766) 4371 894.9 0 gi|14424503|gb|AAH09271.1| UBE3A protein [Homo sap ( 585) 3797 778.6 0 gi|149633923|ref|XP_001514205.1| PREDICTED: simila ( 825) 3370 692.3 2.3e-196 gi|627427|pir||A38920 E6-associated protein - huma ( 874) 3369 692.2 2.7e-196 gi|91091506|ref|XP_969096.1| PREDICTED: similar to ( 880) 2729 562.7 2.7e-157 gi|115718593|ref|XP_001203179.1| PREDICTED: simila ( 881) 2709 558.6 4.4e-156 gi|72005022|ref|XP_786362.1| PREDICTED: similar to ( 904) 2705 557.8 7.9e-156 gi|194687632|ref|XP_001790044.1| PREDICTED: simila ( 443) 2650 546.4 1e-152 gi|3421153|emb|CAA04535.1| E6-AP ubiquitin-protein ( 415) 2562 528.6 2.2e-147 gi|198285653|gb|ACH85365.1| ubiquitin protein liga ( 419) 2481 512.2 1.9e-142 gi|47218906|emb|CAG05672.1| unnamed protein produc ( 844) 2456 507.4 1.1e-140 gi|212517949|gb|EEB19773.1| ubiquitin-protein liga ( 931) 2436 503.4 2e-139 gi|6573516|pdb|1C4Z|A Chain A, Structure Of E6ap: ( 358) 2352 486.1 1.2e-134 >>gi|76880494|ref|NP_035798.2| ubiquitin protein ligase (870 aa) initn: 5679 init1: 5679 opt: 5679 Z-score: 6206.5 bits: 1159.6 E(): 0 Smith-Waterman score: 5679; 100.000% identity (100.000% similar) in 864 aa overlap (43-906:7-870) 20 30 40 50 60 70 mKIAA4 VAGGGGGRGRQGPVRRPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYH :::::::::::::::::::::::::::::: gi|768 MATACKRSPGESQSEDIEASRMKRAAAKHLIERYYH 10 20 30 80 90 100 110 120 130 mKIAA4 QLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 QLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLE 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA4 NSKGASNNSEIKMNKKEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 NSKGASNNSEIKMNKKEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAE 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA4 ALVLSFRKVKQHTKEELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 ALVLSFRKVKQHTKEELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGD 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA4 NNVQKLGPDDVTVDIDAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 NNVQKLGPDDVTVDIDAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDP 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA4 NYLNLFIIVMENSNLHSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 NYLNLFIIVMENSNLHSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMME 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA4 TFQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 TFQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPI 340 350 360 370 380 390 440 450 460 470 480 490 mKIAA4 PESSELTLQELLGDERRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 PESSELTLQELLGDERRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMD 400 410 420 430 440 450 500 510 520 530 540 550 mKIAA4 KDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 KDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNP 460 470 480 490 500 510 560 570 580 590 600 610 mKIAA4 YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEE 520 530 540 550 560 570 620 630 640 650 660 670 mKIAA4 IFNPDIGMFTYDEATKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 IFNPDIGMFTYDEATKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL 580 590 600 610 620 630 680 690 700 710 720 730 mKIAA4 MGKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 MGKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGD 640 650 660 670 680 690 740 750 760 770 780 790 mKIAA4 KIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 KIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG 700 710 720 730 740 750 800 810 820 830 840 850 mKIAA4 SRNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 SRNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLG 760 770 780 790 800 810 860 870 880 890 900 mKIAA4 KLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 KLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 820 830 840 850 860 870 >>gi|76880500|ref|NP_001029134.1| ubiquitin protein liga (849 aa) initn: 5584 init1: 5584 opt: 5584 Z-score: 6102.7 bits: 1140.3 E(): 0 Smith-Waterman score: 5584; 100.000% identity (100.000% similar) in 849 aa overlap (58-906:1-849) 30 40 50 60 70 80 mKIAA4 RPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEF :::::::::::::::::::::::::::::: gi|768 MKRAAAKHLIERYYHQLTEGCGNEACTNEF 10 20 30 90 100 110 120 130 140 mKIAA4 CASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGASNNSEIKMNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 CASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGASNNSEIKMNK 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 KEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEALVLSFRKVKQHTKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 KEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEALVLSFRKVKQHTKE 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA4 ELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDNNVQKLGPDDVTVDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 ELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDNNVQKLGPDDVTVDI 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA4 DAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPNYLNLFIIVMENSNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 DAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPNYLNLFIIVMENSNL 220 230 240 250 260 270 330 340 350 360 370 380 mKIAA4 HSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMMETFQQLITYKVISNEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 HSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMMETFQQLITYKVISNEF 280 290 300 310 320 330 390 400 410 420 430 440 mKIAA4 NSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIPESSELTLQELLGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 NSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIPESSELTLQELLGDE 340 350 360 370 380 390 450 460 470 480 490 500 mKIAA4 RRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMDKDYTFFKVETENKFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 RRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMDKDYTFFKVETENKFS 400 410 420 430 440 450 510 520 530 540 550 560 mKIAA4 FMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 FMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDA 460 470 480 490 500 510 570 580 590 600 610 620 mKIAA4 LVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 LVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEAT 520 530 540 550 560 570 630 640 650 660 670 680 mKIAA4 KLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 KLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHP 580 590 600 610 620 630 690 700 710 720 730 740 mKIAA4 VLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 VLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNL 640 650 660 670 680 690 750 760 770 780 790 800 mKIAA4 YSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 YSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY 700 710 720 730 740 750 810 820 830 840 850 860 mKIAA4 DGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 DGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTER 760 770 780 790 800 810 870 880 890 900 mKIAA4 LPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML ::::::::::::::::::::::::::::::::::::::: gi|768 LPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 820 830 840 >>gi|2262222|gb|AAB63361.1| E6-AP ubiquitin protein liga (869 aa) initn: 3919 init1: 3919 opt: 5565 Z-score: 6081.8 bits: 1136.5 E(): 0 Smith-Waterman score: 5565; 98.494% identity (99.073% similar) in 863 aa overlap (44-906:8-869) 20 30 40 50 60 70 mKIAA4 AGGGGGRGRQGPVRRPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYHQ :::::::::::::::::::::::::::::: gi|226 MATACKSSPGESQSEDIEASRMKRAAAKHLIERYYHQ 10 20 30 80 90 100 110 120 130 mKIAA4 LTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 LTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLEN 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA4 SKGASNNSEIKMNKKEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 SKGASNNSEIKMNKKEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEA 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA4 LVLSFRKVKQHTKEELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDN :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|226 LVLSFRKVKQHTKDELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDN 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA4 NVQKLGPDDVTVDIDAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 NVQKLGPDDVTVDIDAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPN 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA4 YLNLFIIVMENSNLHSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMMET :::::::.:::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|226 YLNLFIILMENSNLHSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYTADQIRRMMET 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA4 FQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIP ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|226 FQQLITYKVISNEFNSRNLVNDDDAIVAASNCLKMVYYANVVGGDVDTNHNEEDDEEPIP 340 350 360 370 380 390 440 450 460 470 480 490 mKIAA4 ESSELTLQELLGDERRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMDK :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|226 ESSELTLQELLGDERRNKKGPRVDPLETELGVKTLDCRKPLISFEESINEPLNDVLEMDK 400 410 420 430 440 450 500 510 520 530 540 550 mKIAA4 DYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPY :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|226 DYTFFKVETENKGSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPY 460 470 480 490 500 510 560 570 580 590 600 610 mKIAA4 LRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEI : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 LTLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEI 520 530 540 550 560 570 620 630 640 650 660 670 mKIAA4 FNPDIGMFTYDEATKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLM ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|226 FNPDIGMFTYDEATKLFWFNPSSFETEGQFTLIGI-LGLAIYNNCILDVHFPMVVYRKLM 580 590 600 610 620 630 680 690 700 710 720 730 mKIAA4 GKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 GKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDK 640 650 660 670 680 690 740 750 760 770 780 790 mKIAA4 IPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGS :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|226 IPITNENRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGS 700 710 720 730 740 750 800 810 820 830 840 850 mKIAA4 RNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGK :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|226 RNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGK 760 770 780 790 800 810 860 870 880 890 900 mKIAA4 LKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML ::::::::::::::::::::::::::::::::::::. ::::::::::::::: gi|226 LKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKGFGML 820 830 840 850 860 >>gi|6647866|sp|O08759.1|UBE3A_MOUSE RecName: Full=Ubiqu (885 aa) initn: 3919 init1: 3919 opt: 5565 Z-score: 6081.7 bits: 1136.5 E(): 0 Smith-Waterman score: 5565; 98.494% identity (99.073% similar) in 863 aa overlap (44-906:24-885) 20 30 40 50 60 70 mKIAA4 AGGGGGRGRQGPVRRPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYHQ :::::::::::::::::::::::::::::: gi|664 MFLISDSKLLSPSCHRMATACKSSPGESQSEDIEASRMKRAAAKHLIERYYHQ 10 20 30 40 50 80 90 100 110 120 130 mKIAA4 LTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|664 LTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLEN 60 70 80 90 100 110 140 150 160 170 180 190 mKIAA4 SKGASNNSEIKMNKKEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|664 SKGASNNSEIKMNKKEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEA 120 130 140 150 160 170 200 210 220 230 240 250 mKIAA4 LVLSFRKVKQHTKEELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDN :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|664 LVLSFRKVKQHTKDELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDN 180 190 200 210 220 230 260 270 280 290 300 310 mKIAA4 NVQKLGPDDVTVDIDAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|664 NVQKLGPDDVTVDIDAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPN 240 250 260 270 280 290 320 330 340 350 360 370 mKIAA4 YLNLFIIVMENSNLHSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMMET :::::::.:::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|664 YLNLFIILMENSNLHSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYTADQIRRMMET 300 310 320 330 340 350 380 390 400 410 420 430 mKIAA4 FQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIP ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|664 FQQLITYKVISNEFNSRNLVNDDDAIVAASNCLKMVYYANVVGGDVDTNHNEEDDEEPIP 360 370 380 390 400 410 440 450 460 470 480 490 mKIAA4 ESSELTLQELLGDERRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMDK :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|664 ESSELTLQELLGDERRNKKGPRVDPLETELGVKTLDCRKPLISFEESINEPLNDVLEMDK 420 430 440 450 460 470 500 510 520 530 540 550 mKIAA4 DYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPY :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|664 DYTFFKVETENKGSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPY 480 490 500 510 520 530 560 570 580 590 600 610 mKIAA4 LRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEI : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|664 LTLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEI 540 550 560 570 580 590 620 630 640 650 660 670 mKIAA4 FNPDIGMFTYDEATKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLM ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|664 FNPDIGMFTYDEATKLFWFNPSSFETEGQFTLIGI-LGLAIYNNCILDVHFPMVVYRKLM 600 610 620 630 640 650 680 690 700 710 720 730 mKIAA4 GKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|664 GKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDK 660 670 680 690 700 710 740 750 760 770 780 790 mKIAA4 IPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGS :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|664 IPITNENRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGS 720 730 740 750 760 770 800 810 820 830 840 850 mKIAA4 RNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGK :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|664 RNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGK 780 790 800 810 820 830 860 870 880 890 900 mKIAA4 LKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML ::::::::::::::::::::::::::::::::::::. ::::::::::::::: gi|664 LKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKGFGML 840 850 860 870 880 >>gi|3978458|gb|AAC83345.1| E6-AP ubiquitin protein liga (849 aa) initn: 5455 init1: 5455 opt: 5455 Z-score: 5961.7 bits: 1114.2 E(): 0 Smith-Waterman score: 5455; 97.998% identity (98.587% similar) in 849 aa overlap (58-906:1-849) 30 40 50 60 70 80 mKIAA4 RPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEF :::::::::::::::::::::::::::::: gi|397 MKRAAAKHLIERYYHQLTEGCGNEACTNEF 10 20 30 90 100 110 120 130 140 mKIAA4 CASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGASNNSEIKMNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 CASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGASNNSEIKMNK 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 KEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEALVLSFRKVKQHTKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 KEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEALVLSFRKVKQHTKE 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA4 ELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDNNVQKLGPDDVTVDI :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|397 ELKSLQEKDEDKDEDEKEKAACSVAAMEEDSEASSSRMGDSSQGDNNVQKLGPDDVTVDI 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA4 DAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPNYLNLFIIVMENSNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 DAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPNYLNLFIIVMENSNL 220 230 240 250 260 270 330 340 350 360 370 380 mKIAA4 HSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMMETFQQLITYKVISNEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 HSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMMETFQQLITYKVISNEF 280 290 300 310 320 330 390 400 410 420 430 440 mKIAA4 NSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIPESSELTLQELLGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 NSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIPESSELTLQELLGDE 340 350 360 370 380 390 450 460 470 480 490 500 mKIAA4 RRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMDKDYTFFKVETENKFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 RRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMDKDYTFFKVETENKFS 400 410 420 430 440 450 510 520 530 540 550 560 mKIAA4 FMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 FMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDA 460 470 480 490 500 510 570 580 590 600 610 620 mKIAA4 LVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEAT ::::::::::::::::::::::::::::: . . : ::. ::::::::::::::::::: gi|397 LVRLEMIAMENPADLKKQLYVEFEGEQGVMREAFPKSFFSWVVEEIFNPDIGMFTYDEAT 520 530 540 550 560 570 630 640 650 660 670 680 mKIAA4 KLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHP ::::::::::::::: .:::::::::::::::::::::::::::::::::::::: gi|397 KLFWFNPSSFETEGQVYSDWHILGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHP 580 590 600 610 620 630 690 700 710 720 730 740 mKIAA4 VLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 VLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNL 640 650 660 670 680 690 750 760 770 780 790 800 mKIAA4 YSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 YSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY 700 710 720 730 740 750 810 820 830 840 850 860 mKIAA4 DGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 DGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTER 760 770 780 790 800 810 870 880 890 900 mKIAA4 LPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML ::::::::::::::::::::::::::::::::::::::: gi|397 LPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 820 830 840 >>gi|1843535|gb|AAB47756.1| E6-AP ubiquitin-protein liga (849 aa) initn: 5454 init1: 5454 opt: 5454 Z-score: 5960.6 bits: 1114.0 E(): 0 Smith-Waterman score: 5454; 97.998% identity (98.587% similar) in 849 aa overlap (58-906:1-849) 30 40 50 60 70 80 mKIAA4 RPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEF :::::::::::::::::::::::::::::: gi|184 MKRAAAKHLIERYYHQLTEGCGNEACTNEF 10 20 30 90 100 110 120 130 140 mKIAA4 CASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGASNNSEIKMNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 CASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGASNNSEIKMNK 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 KEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEALVLSFRKVKQHTKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 KEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEALVLSFRKVKQHTKE 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA4 ELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDNNVQKLGPDDVTVDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 ELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDNNVQKLGPDDVTVDI 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA4 DAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPNYLNLFIIVMENSNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 DAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPNYLNLFIIVMENSNL 220 230 240 250 260 270 330 340 350 360 370 380 mKIAA4 HSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMMETFQQLITYKVISNEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 HSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMMETFQQLITYKVISNEF 280 290 300 310 320 330 390 400 410 420 430 440 mKIAA4 NSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIPESSELTLQELLGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 NSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIPESSELTLQELLGDE 340 350 360 370 380 390 450 460 470 480 490 500 mKIAA4 RRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMDKDYTFFKVETENKFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 RRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMDKDYTFFKVETENKFS 400 410 420 430 440 450 510 520 530 540 550 560 mKIAA4 FMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 FMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDA 460 470 480 490 500 510 570 580 590 600 610 620 mKIAA4 LVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEAT ::::::::::::::::::::::::::::: . . : ::. ::::::::.:::::::::: gi|184 LVRLEMIAMENPADLKKQLYVEFEGEQGVMREAFPKSFFSWVVEEIFNPNIGMFTYDEAT 520 530 540 550 560 570 630 640 650 660 670 680 mKIAA4 KLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHP ::::::::::::::: .:::::::::::::::::::::::::::::::::::::: gi|184 KLFWFNPSSFETEGQVYSDWHILGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHP 580 590 600 610 620 630 690 700 710 720 730 740 mKIAA4 VLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 VLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNL 640 650 660 670 680 690 750 760 770 780 790 800 mKIAA4 YSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 YSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY 700 710 720 730 740 750 810 820 830 840 850 860 mKIAA4 DGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 DGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTER 760 770 780 790 800 810 870 880 890 900 mKIAA4 LPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML ::::::::::::::::::::::::::::::::::::::: gi|184 LPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 820 830 840 >>gi|119578049|gb|EAW57645.1| ubiquitin protein ligase E (872 aa) initn: 5420 init1: 4808 opt: 5451 Z-score: 5957.1 bits: 1113.4 E(): 0 Smith-Waterman score: 5451; 95.502% identity (97.924% similar) in 867 aa overlap (43-906:6-872) 20 30 40 50 60 70 mKIAA4 VAGGGGGRGRQGPVRRPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYH . :: ::.::::::::::::::::::::: gi|119 MATACKRSGEPQSDDIEASRMKRAAAKHLIERYYH 10 20 30 80 90 100 110 120 130 mKIAA4 QLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLE 40 50 60 70 80 90 140 150 160 170 180 mKIAA4 NSKGASNNS--EIKMNKKEGK-DFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFS ::::: ::: ::::::: .. ::::: :::::::::: :.::: ::::::::::::.:: gi|119 NSKGAPNNSCSEIKMNKKGARIDFKDVTYLTEEKVYEILELCREREDYSPLIRVIGRVFS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 SAEALVLSFRKVKQHTKEELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSS :::::: ::::::::::::::::: ::::::::::::::::::::::::::::::.:::: gi|119 SAEALVQSFRKVKQHTKEELKSLQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRIGDSS 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QGDNNVQKLGPDDVTVDIDAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYT :::::.::::::::.::::::::::. ::.:::.:::::::::::::::::::::::::. gi|119 QGDNNLQKLGPDDVSVDIDAIRRVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYS 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 RDPNYLNLFIIVMENSNLHSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRR ::::::::::::::: ::::::::::::::::::: :::: ::::::::::::.:::::: gi|119 RDPNYLNLFIIVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLIRLWSKYNADQIRR 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 MMETFQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDE ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|119 MMETFQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDE 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 EPIPESSELTLQELLGDERRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVL ::::::::::::::::.::::::::::::::::::::::::::::: ::::::::::.:: gi|119 EPIPESSELTLQELLGEERRNKKGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNEVL 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA4 EMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQ 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA4 LNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLV 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA4 VEEIFNPDIGMFTYDEATKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVY ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|119 VEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVY 580 590 600 610 620 630 670 680 690 700 710 720 mKIAA4 RKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKE ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|119 RKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKE 640 650 660 670 680 690 730 740 750 760 770 780 mKIAA4 NGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL 700 710 720 730 740 750 790 800 810 820 830 840 mKIAA4 ICGSRNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVG ::::::::::::::::::::::::.::.:::::::::::::::::::::::::::::::: gi|119 ICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVG 760 770 780 790 800 810 850 860 870 880 890 900 mKIAA4 GLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 820 830 840 850 860 870 >>gi|215274240|sp|Q05086.4|UBE3A_HUMAN RecName: Full=Ubi (875 aa) initn: 5419 init1: 4808 opt: 5450 Z-score: 5956.0 bits: 1113.2 E(): 0 Smith-Waterman score: 5450; 95.833% identity (98.148% similar) in 864 aa overlap (46-906:12-875) 20 30 40 50 60 70 mKIAA4 GGGGRGRQGPVRRPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYHQLT :: ::.:::::::::::::::::::::::: gi|215 MEKLHQCYWKSGEPQSDDIEASRMKRAAAKHLIERYYHQLT 10 20 30 40 80 90 100 110 120 130 mKIAA4 EGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 EGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSK 50 60 70 80 90 100 140 150 160 170 180 190 mKIAA4 GASNNS--EIKMNKKEGK-DFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAE :: ::: ::::::: .. ::::: :::::::::: :.::: ::::::::::::.::::: gi|215 GAPNNSCSEIKMNKKGARIDFKDVTYLTEEKVYEILELCREREDYSPLIRVIGRVFSSAE 110 120 130 140 150 160 200 210 220 230 240 250 mKIAA4 ALVLSFRKVKQHTKEELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGD ::: ::::::::::::::::: ::::::::::::::::::::::::::::::.::::::: gi|215 ALVQSFRKVKQHTKEELKSLQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRIGDSSQGD 170 180 190 200 210 220 260 270 280 290 300 310 mKIAA4 NNVQKLGPDDVTVDIDAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDP ::.::::::::.::::::::::. ::.:::.:::::::::::::::::::::::::.::: gi|215 NNLQKLGPDDVSVDIDAIRRVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDP 230 240 250 260 270 280 320 330 340 350 360 370 mKIAA4 NYLNLFIIVMENSNLHSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMME :::::::::::: ::::::::::::::::::: :::: ::::::::::::.::::::::: gi|215 NYLNLFIIVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLIRLWSKYNADQIRRMME 290 300 310 320 330 340 380 390 400 410 420 430 mKIAA4 TFQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPI :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|215 TFQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPI 350 360 370 380 390 400 440 450 460 470 480 490 mKIAA4 PESSELTLQELLGDERRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMD :::::::::::::.::::::::::::::::::::::::::::: ::::::::::.::::: gi|215 PESSELTLQELLGEERRNKKGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNEVLEMD 410 420 430 440 450 460 500 510 520 530 540 550 mKIAA4 KDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 KDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNP 470 480 490 500 510 520 560 570 580 590 600 610 mKIAA4 YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEE 530 540 550 560 570 580 620 630 640 650 660 670 mKIAA4 IFNPDIGMFTYDEATKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|215 IFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL 590 600 610 620 630 640 680 690 700 710 720 730 mKIAA4 MGKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGD :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|215 MGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGD 650 660 670 680 690 700 740 750 760 770 780 790 mKIAA4 KIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 KIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG 710 720 730 740 750 760 800 810 820 830 840 850 mKIAA4 SRNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLG :::::::::::::::::::::.::.::::::::::::::::::::::::::::::::::: gi|215 SRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLG 770 780 790 800 810 820 860 870 880 890 900 mKIAA4 KLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 KLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 830 840 850 860 870 >>gi|114655965|ref|XP_510256.2| PREDICTED: ubiquitin pro (879 aa) initn: 5419 init1: 4808 opt: 5450 Z-score: 5956.0 bits: 1113.2 E(): 0 Smith-Waterman score: 5450; 95.833% identity (98.148% similar) in 864 aa overlap (46-906:16-879) 20 30 40 50 60 70 mKIAA4 GGGGRGRQGPVRRPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYHQLT :: ::.:::::::::::::::::::::::: gi|114 MEYFANCFSIAFYRSGEPQSDDIEASRMKRAAAKHLIERYYHQLT 10 20 30 40 80 90 100 110 120 130 mKIAA4 EGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSK 50 60 70 80 90 100 140 150 160 170 180 190 mKIAA4 GASNNS--EIKMNKKEGK-DFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAE :: ::: ::::::: .. ::::: :::::::::: :.::: ::::::::::::.::::: gi|114 GAPNNSCSEIKMNKKGARIDFKDVTYLTEEKVYEILELCREREDYSPLIRVIGRVFSSAE 110 120 130 140 150 160 200 210 220 230 240 250 mKIAA4 ALVLSFRKVKQHTKEELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGD ::: ::::::::::::::::: ::::::::::::::::::::::::::::::.::::::: gi|114 ALVQSFRKVKQHTKEELKSLQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRIGDSSQGD 170 180 190 200 210 220 260 270 280 290 300 310 mKIAA4 NNVQKLGPDDVTVDIDAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDP ::.::::::::.::::::::::. ::.:::.:::::::::::::::::::::::::.::: gi|114 NNLQKLGPDDVSVDIDAIRRVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDP 230 240 250 260 270 280 320 330 340 350 360 370 mKIAA4 NYLNLFIIVMENSNLHSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMME :::::::::::: ::::::::::::::::::: :::: ::::::::::::.::::::::: gi|114 NYLNLFIIVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLIRLWSKYNADQIRRMME 290 300 310 320 330 340 380 390 400 410 420 430 mKIAA4 TFQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPI :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|114 TFQQLITYKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPI 350 360 370 380 390 400 440 450 460 470 480 490 mKIAA4 PESSELTLQELLGDERRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMD :::::::::::::.::::::::::::::::::::::::::::: ::::::::::.::::: gi|114 PESSELTLQELLGEERRNKKGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNEVLEMD 410 420 430 440 450 460 500 510 520 530 540 550 mKIAA4 KDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNP 470 480 490 500 510 520 560 570 580 590 600 610 mKIAA4 YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEE 530 540 550 560 570 580 620 630 640 650 660 670 mKIAA4 IFNPDIGMFTYDEATKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|114 IFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL 590 600 610 620 630 640 680 690 700 710 720 730 mKIAA4 MGKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGD :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|114 MGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGD 650 660 670 680 690 700 740 750 760 770 780 790 mKIAA4 KIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG 710 720 730 740 750 760 800 810 820 830 840 850 mKIAA4 SRNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLG :::::::::::::::::::::.::.::::::::::::::::::::::::::::::::::: gi|114 SRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLG 770 780 790 800 810 820 860 870 880 890 900 mKIAA4 KLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 830 840 850 860 870 >>gi|109458840|ref|XP_341868.3| PREDICTED: similar to ub (847 aa) initn: 4847 init1: 4847 opt: 5449 Z-score: 5955.1 bits: 1113.0 E(): 0 Smith-Waterman score: 5449; 97.644% identity (98.940% similar) in 849 aa overlap (58-906:1-847) 30 40 50 60 70 80 mKIAA4 RPQLRGPQPTRGGEDRSPGESQSEDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEF :::::::::::::::::::::::::::::: gi|109 MKRAAAKHLIERYYHQLTEGCGNEACTNEF 10 20 30 90 100 110 120 130 140 mKIAA4 CASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGASNNSEIKMNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 CASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGASNNSEIKMNK 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 KEGKDFKDVIYLTEEKVYEIYEFCRESEDYSPLIRVIGRIFSSAEALVLSFRKVKQHTKE :: .::.: :::::::::::::::: ::::::::::::::::::::: ::::::::::: gi|109 KE--EFKEVDYLTEEKVYEIYEFCREREDYSPLIRVIGRIFSSAEALVQSFRKVKQHTKE 100 110 120 130 140 210 220 230 240 250 260 mKIAA4 ELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDNNVQKLGPDDVTVDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ELKSLQEKDEDKDEDEKEKAACSAAAMEEDSEASSSRMGDSSQGDNNVQKLGPDDVTVDI 150 160 170 180 190 200 270 280 290 300 310 320 mKIAA4 DAIRRVYSSLLANEKLETAFLNALVYLSPNVECDLTYHNVYTRDPNYLNLFIIVMENSNL :::::::::::..::.::::::::::::::::::::::::::::::::::::::::: :: gi|109 DAIRRVYSSLLSDEKIETAFLNALVYLSPNVECDLTYHNVYTRDPNYLNLFIIVMENRNL 210 220 230 240 250 260 330 340 350 360 370 380 mKIAA4 HSPEYLEMALPLFCKAMCKLPLEAQGKLIRLWSKYSADQIRRMMETFQQLITYKVISNEF ::::::::::::::::: :::: ::::::::::::::::::::::::::::::::::::: gi|109 HSPEYLEMALPLFCKAMSKLPLAAQGKLIRLWSKYSADQIRRMMETFQQLITYKVISNEF 270 280 290 300 310 320 390 400 410 420 430 440 mKIAA4 NSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIPESSELTLQELLGDE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|109 NSRNLVNDDDAIVAASKCLKMVYYANVVGGDVDTNHNEEDDEEPIPESSELTLQELLGEE 330 340 350 360 370 380 450 460 470 480 490 500 mKIAA4 RRNKKGPRVDPLETELGVKTLDCRKPLISFEEFINEPLNDVLEMDKDYTFFKVETENKFS :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|109 RRNKKGPRVDPLETEIGVKTLDCRKPLISFEEFINEPLNDVLEMDKDYTFFKVETENKFS 390 400 410 420 430 440 510 520 530 540 550 560 mKIAA4 FMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDA 450 460 470 480 490 500 570 580 590 600 610 620 mKIAA4 LVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEAT 510 520 530 540 550 560 630 640 650 660 670 680 mKIAA4 KLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHP .::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|109 RLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFCDLGDSHP 570 580 590 600 610 620 690 700 710 720 730 740 mKIAA4 VLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNL .:::::::::::::.:::::::::::::::::::::::::::::::::::::::::::.: gi|109 ILYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVSL 630 640 650 660 670 680 750 760 770 780 790 800 mKIAA4 YSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY 690 700 710 720 730 740 810 820 830 840 850 860 mKIAA4 DGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DGGYTRESVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTER 750 760 770 780 790 800 870 880 890 900 mKIAA4 LPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML ::::::::::::::::::::::::::::::::::::::: gi|109 LPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 810 820 830 840 906 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Wed Mar 18 03:41:05 2009 done: Wed Mar 18 03:49:37 2009 Total Scan time: 1120.850 Total Display time: 0.450 Function used was FASTA [version 34.26.5 April 26, 2007]