# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj69060.fasta.nr -Q ../query/mKIAA0632.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0632, 411 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921059 sequences Expectation_n fit: rho(ln(x))= 5.3392+/-0.000183; mu= 10.4667+/- 0.010 mean_var=73.5192+/-14.333, 0's: 33 Z-trim: 34 B-trim: 2 in 1/65 Lambda= 0.149580 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|62511119|sp|Q8C2E4.1|PTCD1_MOUSE RecName: Full= ( 695) 1527 338.7 2.5e-90 gi|148687047|gb|EDL18994.1| pentatricopeptide repe ( 695) 1527 338.7 2.5e-90 gi|52789359|gb|AAH83097.1| Pentatricopeptide repea ( 695) 1504 333.7 7.9e-89 gi|74219722|dbj|BAE29626.1| unnamed protein produc ( 695) 1489 330.5 7.4e-88 gi|125858876|gb|AAI29117.1| Ptcd1 protein [Rattus ( 686) 1337 297.7 5.5e-78 gi|149034889|gb|EDL89609.1| rCG42656 [Rattus norve ( 652) 1334 297.0 8.3e-78 gi|73958083|ref|XP_546978.2| PREDICTED: similar to ( 760) 1094 245.3 3.6e-62 gi|109066083|ref|XP_001111767.1| PREDICTED: simila ( 775) 1044 234.5 6.5e-59 gi|62287490|sp|Q5R655.1|PTCD1_PONAB RecName: Full= ( 698) 1039 233.4 1.3e-58 gi|74355886|gb|AAI03662.1| PTCD1 protein [Homo sap ( 482) 1029 231.1 4.2e-58 gi|45945517|gb|AAH03688.2| PTCD1 protein [Homo sap ( 595) 1029 231.2 5e-58 gi|62287483|sp|O75127.2|PTCD1_HUMAN RecName: Full= ( 700) 1029 231.2 5.7e-58 gi|73695306|gb|AAI03496.1| Pentatricopeptide repea ( 700) 1029 231.2 5.7e-58 gi|194381492|dbj|BAG58700.1| unnamed protein produ ( 749) 1029 231.2 6e-58 gi|51593777|gb|AAH80580.1| Pentatricopeptide repea ( 700) 1021 229.5 1.9e-57 gi|114614904|ref|XP_519233.2| PREDICTED: pentatric ( 700) 1012 227.5 7.2e-57 gi|55778199|gb|AAH86472.1| LOC495833 protein [Xeno ( 687) 598 138.2 5.6e-30 gi|163915440|gb|AAI57261.1| LOC100135205 protein [ ( 494) 580 134.2 6.3e-29 gi|68353972|ref|XP_698798.1| PREDICTED: pentatrico ( 694) 544 126.6 1.8e-26 gi|149409152|ref|XP_001512126.1| PREDICTED: simila ( 687) 506 118.3 5.3e-24 gi|126334588|ref|XP_001370074.1| PREDICTED: hypoth ( 677) 452 106.7 1.7e-20 gi|210101168|gb|EEA49237.1| hypothetical protein B ( 571) 439 103.8 1e-19 gi|210130701|gb|EEA78372.1| hypothetical protein B ( 986) 441 104.4 1.2e-19 gi|118097819|ref|XP_414799.2| PREDICTED: hypotheti ( 792) 412 98.1 7.6e-18 gi|193786060|dbj|BAG50949.1| unnamed protein produ ( 526) 346 83.7 1.1e-13 gi|47218952|emb|CAF98150.1| unnamed protein produc ( 575) 342 82.9 2.1e-13 gi|7295484|gb|AAF50798.1| CG4611 [Drosophila melan ( 703) 270 67.4 1.2e-08 gi|167868351|gb|EDS31734.1| pentatricopeptide repe ( 658) 269 67.2 1.3e-08 gi|194161822|gb|EDW76723.1| GK19803 [Drosophila wi ( 700) 267 66.8 1.8e-08 gi|194195717|gb|EDX09293.1| GD13877 [Drosophila si ( 702) 267 66.8 1.8e-08 gi|91078688|ref|XP_971079.1| PREDICTED: similar to ( 648) 264 66.1 2.7e-08 gi|194179872|gb|EDW93483.1| GE21482 [Drosophila ya ( 702) 264 66.1 2.8e-08 gi|190653750|gb|EDV50993.1| GG15260 [Drosophila er ( 703) 261 65.5 4.4e-08 gi|194128513|gb|EDW50556.1| GM14694 [Drosophila se ( 686) 255 64.2 1.1e-07 gi|54642581|gb|EAL31328.1| GA18300 [Drosophila pse ( 707) 255 64.2 1.1e-07 gi|194108117|gb|EDW30160.1| GL22616 [Drosophila pe ( 707) 255 64.2 1.1e-07 gi|194154093|gb|EDW69277.1| GJ13155 [Drosophila vi ( 721) 253 63.8 1.5e-07 gi|193919747|gb|EDW18614.1| GI13329 [Drosophila mo ( 723) 252 63.6 1.7e-07 gi|190624844|gb|EDV40368.1| GF23967 [Drosophila an ( 703) 250 63.1 2.3e-07 gi|115896489|ref|XP_792275.2| PREDICTED: hypotheti ( 708) 250 63.1 2.3e-07 gi|193897439|gb|EDV96305.1| GH16176 [Drosophila gr ( 711) 246 62.3 4.2e-07 gi|157015941|gb|EAA11660.4| AGAP006051-PA [Anophel ( 676) 243 61.6 6.3e-07 gi|108877995|gb|EAT42220.1| conserved hypothetical ( 676) 240 60.9 9.9e-07 gi|212514731|gb|EEB16987.1| pentatricopeptide repe ( 634) 229 58.5 4.9e-06 gi|198416303|ref|XP_002123758.1| PREDICTED: simila ( 648) 196 51.4 0.00069 gi|156537390|ref|XP_001606749.1| PREDICTED: simila ( 650) 180 48.0 0.0076 >>gi|62511119|sp|Q8C2E4.1|PTCD1_MOUSE RecName: Full=Pent (695 aa) initn: 1520 init1: 1520 opt: 1527 Z-score: 1777.9 bits: 338.7 E(): 2.5e-90 Smith-Waterman score: 2217; 71.561% identity (71.933% similar) in 538 aa overlap (13-399:1-538) 10 20 30 40 50 60 mKIAA0 NAQSCRGSRQPAMDLLRLSRLFSGPRPLGLSVLQHLDLVGSTRWTGGREGPERLRAAFCG :::::::::::::::::::::::::::::::::::::::::::::::: gi|625 MDLLRLSRLFSGPRPLGLSVLQHLDLVGSTRWTGGREGPERLRAAFCG 10 20 30 40 70 80 90 100 110 120 mKIAA0 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY 50 60 70 80 90 100 130 140 150 160 mKIAA0 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKV------------------ :::::::::::::::::::::::::::::::::::::::::. gi|625 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKLAEALDLFERQMLKEERLQ 110 120 130 140 150 160 mKIAA0 ------------------------------------------------------------ gi|625 PLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQS 170 180 190 200 210 220 mKIAA0 ------------------------------------------------------------ gi|625 ALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLV 230 240 250 260 270 280 170 180 190 200 mKIAA0 -------------LQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEE .:::::::::::::::::::::::::::::::::::::::::::::: gi|625 GCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEE 290 300 310 320 330 340 210 220 230 240 250 260 mKIAA0 NILLPPPKGRHMAGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 NILLPPPKGRHMAGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRT 350 360 370 380 390 400 270 280 290 300 310 320 mKIAA0 QPEVETTAEPGHTVALTPLAPKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 QPEVETTAEPGHTVALTPLAPKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGG 410 420 430 440 450 460 330 340 350 360 370 380 mKIAA0 LEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSAAESSLLSVLDRHRVEADVTFFNTLIRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 LEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSAAESSLLSVLDRHRVEADVTFFNTLIRKK 470 480 490 500 510 520 390 400 410 mKIAA0 SKLGDLEGAKVRGLSTRGSPSL :::::::::: gi|625 SKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIGCHRPRDGMQLLADMKKSQVSPNIHIY 530 540 550 560 570 580 >>gi|148687047|gb|EDL18994.1| pentatricopeptide repeat d (695 aa) initn: 1520 init1: 1520 opt: 1527 Z-score: 1777.9 bits: 338.7 E(): 2.5e-90 Smith-Waterman score: 2207; 71.190% identity (71.747% similar) in 538 aa overlap (13-399:1-538) 10 20 30 40 50 60 mKIAA0 NAQSCRGSRQPAMDLLRLSRLFSGPRPLGLSVLQHLDLVGSTRWTGGREGPERLRAAFCG :::::::::::::::.::::::::::::::::::::::: :::::::: gi|148 MDLLRLSRLFSGPRPIGLSVLQHLDLVGSTRWTGGREGPARLRAAFCG 10 20 30 40 70 80 90 100 110 120 mKIAA0 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY 50 60 70 80 90 100 130 140 150 160 mKIAA0 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKV------------------ :::::::::::::::::::::::::::::::::::::::::. gi|148 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKLAEALDLFERQMLKEERLQ 110 120 130 140 150 160 mKIAA0 ------------------------------------------------------------ gi|148 PLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQS 170 180 190 200 210 220 mKIAA0 ------------------------------------------------------------ gi|148 ALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLV 230 240 250 260 270 280 170 180 190 200 mKIAA0 -------------LQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEE .:::::::::::::::::::::::::::::::::::::::::::::: gi|148 GCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEE 290 300 310 320 330 340 210 220 230 240 250 260 mKIAA0 NILLPPPKGRHMAGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NILLPPPKGRHMAGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRT 350 360 370 380 390 400 270 280 290 300 310 320 mKIAA0 QPEVETTAEPGHTVALTPLAPKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QPEVETTAEPGHTVALTPLAPKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGG 410 420 430 440 450 460 330 340 350 360 370 380 mKIAA0 LEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSAAESSLLSVLDRHRVEADVTFFNTLIRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSAAESSLLSVLDRHRVEADVTFFNTLIRKK 470 480 490 500 510 520 390 400 410 mKIAA0 SKLGDLEGAKVRGLSTRGSPSL :::::::::: gi|148 SKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIGCHRPRDGMQLLADMKKSQVSPNIHIY 530 540 550 560 570 580 >>gi|52789359|gb|AAH83097.1| Pentatricopeptide repeat do (695 aa) initn: 1497 init1: 1497 opt: 1504 Z-score: 1751.1 bits: 333.7 E(): 7.9e-89 Smith-Waterman score: 2184; 70.632% identity (71.561% similar) in 538 aa overlap (13-399:1-538) 10 20 30 40 50 60 mKIAA0 NAQSCRGSRQPAMDLLRLSRLFSGPRPLGLSVLQHLDLVGSTRWTGGREGPERLRAAFCG :::::::::::::::.::::::::::::::::::::::: :::::::: gi|527 MDLLRLSRLFSGPRPIGLSVLQHLDLVGSTRWTGGREGPARLRAAFCG 10 20 30 40 70 80 90 100 110 120 mKIAA0 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY 50 60 70 80 90 100 130 140 150 160 mKIAA0 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKV------------------ :::::::::::::::::::::::::::::::::::::::::. gi|527 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKLAEALDLFERQMLKEERLQ 110 120 130 140 150 160 mKIAA0 ------------------------------------------------------------ gi|527 PLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQS 170 180 190 200 210 220 mKIAA0 ------------------------------------------------------------ gi|527 ALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLV 230 240 250 260 270 280 170 180 190 200 mKIAA0 -------------LQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEE .:::::::::::::::::::::::::::::::::::::::::::::: gi|527 GCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEE 290 300 310 320 330 340 210 220 230 240 250 260 mKIAA0 NILLPPPKGRHMAGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRT .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 TILLPPPKGRHMAGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRT 350 360 370 380 390 400 270 280 290 300 310 320 mKIAA0 QPEVETTAEPGHTVALTPLAPKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGG :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|527 QPEVETTAEPGHTVALTPLASKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGG 410 420 430 440 450 460 330 340 350 360 370 380 mKIAA0 LEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSAAESSLLSVLDRHRVEADVTFFNTLIRKK :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|527 LEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSTAESSLLSVLDRHRVEADVTFFNTLIRKK 470 480 490 500 510 520 390 400 410 mKIAA0 SKLGDLEGAKVRGLSTRGSPSL :::::::::: gi|527 SKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIGCHRPRDGMQLLADMKKSQVSPNIHIY 530 540 550 560 570 580 >>gi|74219722|dbj|BAE29626.1| unnamed protein product [M (695 aa) initn: 1482 init1: 1482 opt: 1489 Z-score: 1733.6 bits: 330.5 E(): 7.4e-88 Smith-Waterman score: 2169; 70.260% identity (71.190% similar) in 538 aa overlap (13-399:1-538) 10 20 30 40 50 60 mKIAA0 NAQSCRGSRQPAMDLLRLSRLFSGPRPLGLSVLQHLDLVGSTRWTGGREGPERLRAAFCG :::::::::::::::.::::::::::::::::::::::: :::::::: gi|742 MDLLRLSRLFSGPRPIGLSVLQHLDLVGSTRWTGGREGPARLRAAFCG 10 20 30 40 70 80 90 100 110 120 mKIAA0 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY 50 60 70 80 90 100 130 140 150 160 mKIAA0 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKV------------------ :::::::::::::::::::::::::::::::::::::::::. gi|742 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKLAEALDLFERQMLKEERLQ 110 120 130 140 150 160 mKIAA0 ------------------------------------------------------------ gi|742 PLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQS 170 180 190 200 210 220 mKIAA0 ------------------------------------------------------------ gi|742 ALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLV 230 240 250 260 270 280 170 180 190 200 mKIAA0 -------------LQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEE .:::::::::::::::::::::::::::::::::::::::::::::: gi|742 GCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEE 290 300 310 320 330 340 210 220 230 240 250 260 mKIAA0 NILLPPPKGRHMAGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRT .::::::: ::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|742 TILLPPPKDRHMAGRKVQAKKVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRT 350 360 370 380 390 400 270 280 290 300 310 320 mKIAA0 QPEVETTAEPGHTVALTPLAPKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGG :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|742 QPEVETTAEPGHTVALTPLASKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGG 410 420 430 440 450 460 330 340 350 360 370 380 mKIAA0 LEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSAAESSLLSVLDRHRVEADVTFFNTLIRKK :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|742 LEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSTAESSLLSVLDRHRVEADVTFFNTLIRKK 470 480 490 500 510 520 390 400 410 mKIAA0 SKLGDLEGAKVRGLSTRGSPSL :::::::::: gi|742 SKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIGCHRPRDGMQLLADMKKSQVSPNIHIY 530 540 550 560 570 580 >>gi|125858876|gb|AAI29117.1| Ptcd1 protein [Rattus norv (686 aa) initn: 1589 init1: 1334 opt: 1337 Z-score: 1556.4 bits: 297.7 E(): 5.5e-78 Smith-Waterman score: 1730; 59.851% identity (65.428% similar) in 538 aa overlap (13-399:1-529) 10 20 30 40 50 60 mKIAA0 NAQSCRGSRQPAMDLLRLSRLFSGPRPLGLSVLQHLDLVGSTRWTGGREGPERLRAAFCG :::::::::::::.:.::::::.:::. ::.:::::::: :::: :. gi|125 MDLLRLSRLFSGPHPIGLSVLQRLDLLRSTQWTGGREGPAWLRAASCS 10 20 30 40 70 80 90 100 110 120 mKIAA0 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY ::: .::.::::::::: . :::::: ::::::.:: :::::::::::::::: gi|125 SSS-------HQKRMSSLCSDSS--TPVAPQEEEEEESFGTLSEKFSSRRIFHKSTAQLY 50 60 70 80 90 130 140 150 160 mKIAA0 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKV------------------ ::.::::: :::::::: .: ::: ::::.:::::.::::. gi|125 NLKLKEQGVEEEELEPRLRQGGRNTPYWYFLQCKRLLKEGKLAEALDLFERQMLKEERLQ 100 110 120 130 140 150 mKIAA0 ------------------------------------------------------------ gi|125 PLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQS 160 170 180 190 200 210 mKIAA0 ------------------------------------------------------------ gi|125 ALKLRQQLQAQNFQLNLKTYHALLKVAAKCADLRVCLEVFKEIIQKGHAVTEETFCFLLM 220 230 240 250 260 270 170 180 190 200 mKIAA0 -------------LQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQEE .:::::::::::::::::::::: ::::::::::::::::::::::: gi|125 GCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLGAARDCGLGDPEVASRLLLTSQEE 280 290 300 310 320 330 210 220 230 240 250 260 mKIAA0 NILLPPPKGRHMAGRKVQAKTVHGVSLRHVEALERQLFLEPSQKLEGPPALPEARVTSRT .::: :: ::..:: :::::: ::::..::::::::::::::.:::::::.:::: :::: gi|125 TILLQPPTGRRLAGGKVQAKTRHGVSVKHVEALERQLFLEPSHKLEGPPAFPEARETSRT 340 350 360 370 380 390 270 280 290 300 310 320 mKIAA0 QPEVETTAEPGHTVALTPLAPKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALMGG :::::: ::::: ::.::: :: :::.:.:::::.::::::::::::::::::::::: gi|125 QPEVETKAEPGHMGALAPLALKPPDLELQVNLLSLGALSPAVVSFGTVATPADRLALMGG 400 410 420 430 440 450 330 340 350 360 370 380 mKIAA0 LEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSAAESSLLSVLDRHRVEADVTFFNTLIRKK ::::::::.:: ::::::::::::::::::: :::::::.:::::::::.:::::::::: gi|125 LEGFLGKMAEHRLQPDIKTLTLLAEVVEPGSPAESSLLSILDRHRVEADITFFNTLIRKK 460 470 480 490 500 510 390 400 410 mKIAA0 SKLGDLEGAKVRGLSTRGSPSL :::::::::: gi|125 SKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIGCHRPRDGMQLLADMKKSQVTPNTHIY 520 530 540 550 560 570 >>gi|149034889|gb|EDL89609.1| rCG42656 [Rattus norvegicu (652 aa) initn: 1586 init1: 1331 opt: 1334 Z-score: 1553.2 bits: 297.0 E(): 8.3e-78 Smith-Waterman score: 1795; 63.889% identity (69.841% similar) in 504 aa overlap (13-399:1-495) 10 20 30 40 50 60 mKIAA0 NAQSCRGSRQPAMDLLRLSRLFSGPRPLGLSVLQHLDLVGSTRWTGGREGPERLRAAFCG :::::::::::::.:.::::::.:::. ::.:::::::: :::: :. gi|149 MDLLRLSRLFSGPHPIGLSVLQRLDLLRSTQWTGGREGPAWLRAASCS 10 20 30 40 70 80 90 100 110 120 mKIAA0 SSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQLY ::: .::.::::::::: . :::::: ::::::.:: :::::::::::::::: gi|149 SSS-------HQKRMSSLCSDSS--TPVAPQEEEEEESFGTLSEKFSSRRIFHKSTAQLY 50 60 70 80 90 130 140 150 160 mKIAA0 NLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGK------------------- ::.::::: :::::::: .: ::: ::::.:::::.:::: gi|149 NLKLKEQGVEEEELEPRLRQGGRNTPYWYFLQCKRLLKEGKLAEALDLFERQMLKEERLQ 100 110 120 130 140 150 mKIAA0 ------------------------------------------------------------ gi|149 PLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQS 160 170 180 190 200 210 170 180 mKIAA0 --------------------------------------VLQVWRQMLSLGIKPSRHGYNL :..::::::::::::::::::: gi|149 ALKLRQQLQAQNFQLNLKTYHALLKVAAKCADLRVCLEVFKVWRQMLSLGIKPSRHGYNL 220 230 240 250 260 270 190 200 210 220 230 240 mKIAA0 LLEAARDCGLGDPEVASRLLLTSQEENILLPPPKGRHMAGRKVQAKTVHGVSLRHVEALE :: :::::::::::::::::::::::.::: :: ::..:: :::::: ::::..:::::: gi|149 LLGAARDCGLGDPEVASRLLLTSQEETILLQPPTGRRLAGGKVQAKTRHGVSVKHVEALE 280 290 300 310 320 330 250 260 270 280 290 300 mKIAA0 RQLFLEPSQKLEGPPALPEARVTSRTQPEVETTAEPGHTVALTPLAPKPTHLELEVSLLS ::::::::.:::::::.:::: :::::::::: ::::: ::.::: :: :::.:.::: gi|149 RQLFLEPSHKLEGPPAFPEARETSRTQPEVETKAEPGHMGALAPLALKPPDLELQVNLLS 340 350 360 370 380 390 310 320 330 340 350 360 mKIAA0 LGTLSPAVVSFGTVATPADRLALMGGLEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSAAE ::.:::::::::::::::::::::::::::::::.:: ::::::::::::::::::: :: gi|149 LGALSPAVVSFGTVATPADRLALMGGLEGFLGKMAEHRLQPDIKTLTLLAEVVEPGSPAE 400 410 420 430 440 450 370 380 390 400 410 mKIAA0 SSLLSVLDRHRVEADVTFFNTLIRKKSKLGDLEGAKVRGLSTRGSPSL :::::.:::::::::.:::::::::::::::::::: gi|149 SSLLSILDRHRVEADITFFNTLIRKKSKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIG 460 470 480 490 500 510 gi|149 CHRPRDGMQLLADMKKSQVTPNTHIYSTLINAALKKLDYTYLISILKDMRRNSVPVNEVV 520 530 540 550 560 570 >>gi|73958083|ref|XP_546978.2| PREDICTED: similar to pen (760 aa) initn: 1548 init1: 1092 opt: 1094 Z-score: 1272.4 bits: 245.3 E(): 3.6e-62 Smith-Waterman score: 1403; 48.850% identity (61.947% similar) in 565 aa overlap (9-411:54-615) 10 20 30 mKIAA0 NAQSCRGSRQPAMDLLRLSRLFSGPRPLGLSVLQHLDL ..: .::.:...::: ::.:::.::::: gi|739 DRTTEGPRVSQPGSGLSDFIIFLTCARPWRKKPELDLMRFAQLFSRFRPVGLSALQHLDP 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA0 VGSTRWTGGREGPERLRAAF----CGSSSPL--PLGSGNQKEMSSLCSDSSKLSTVAPQE . ..:.:::::: ::::. : ::::: :.:.::::. ::: :: :. : .: :: gi|739 L-RVKWAGGREGPTWLRAAWLTRAC-SSSPLQLPIGQGNQKNASSLSSDLSQPSPTATQE 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA0 EAEEESFGSLSGKFSSRRIFHKSTAQLYNLQLKEQGGEEEE--LEPRPWRGRRNTQYWYF : :: :::.::.:.::::.:.:::::::::.:.::..:.:: :::. ::::.:: :::: gi|739 E-EEGSFGTLSSKYSSRRMFRKSTAQLYNLRLREQSAEDEERELEPKSWRGRKNTPYWYF 150 160 170 180 190 200 160 mKIAA0 FQCKRLIKEGKV------------------------------------------------ .:::.::.:::. gi|739 LQCKHLIREGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRAGYLKKAFRLYNDMK 210 220 230 240 250 260 mKIAA0 ------------------------------------------------------------ gi|739 KRDLEPTDATYTALFNVCAESPWKDSALQSALKLRQQLQARNFQLNLKTYHALLKMAALC 270 280 290 300 310 320 170 mKIAA0 -------------------------------------------LQVWRQMLSLGIKPSRH :::::::::::..::.: gi|739 ADLRMCLDVFKEIVQKGHAVTEETFSYLLMGCIQDKKTGFRYTLQVWRQMLSLGLQPSQH 330 340 350 360 370 380 180 190 200 210 220 230 mKIAA0 GYNLLLEAARDCGLGDPEVASRLLLTSQEENILLPPPKGRHMAGRKVQAKTVHGVSLRHV :::::: :::::::::::::: ::: .:: .:: : : . ...::.. :.:..:: gi|739 GYNLLLGAARDCGLGDPEVASALLLRPREEMVLLQPRAGGFRTRKRAQAQVGDGMSIKHV 390 400 410 420 430 440 240 250 260 270 280 290 mKIAA0 EALERQLFLEPSQKLEGPPALPEARVTSRTQPEVETTAEPGHTVALTPLAPKPTHLELEV ::::::::::::: .:: : :::. :..::::.: .:: : :.:: :: .:.. ::. gi|739 EALERQLFLEPSQVVEGLPEPREARAPSKAQPEVDTKTEPDHMVTLTSLASEPSRWGLEA 450 460 470 480 490 500 300 310 320 330 340 350 mKIAA0 SLLSLGTLSPAVVSFGTVATPADRLALMGGLEGFLGKMTEHGLQPDIKTLTLLAEVVEPG .::.::.. :::::::::.:::::::::::::::::::.::::.:.:::::::::::::: gi|739 NLLTLGAVPPAVVSFGTVTTPADRLALMGGLEGFLGKMAEHGLKPNIKTLTLLAEVVEPG 510 520 530 540 550 560 360 370 380 390 400 410 mKIAA0 SAAESSLLSVLDRHRVEADVTFFNTLIRKKSKLGDLEGAK--VRGLSTRGS-PSL : ::::::.::: :.:::::::::::.::::::::::::: . :. :: :.: gi|739 SPAESSLLTVLDTHQVEADVTFFNTLMRKKSKLGDLEGAKALLPLLARRGIIPNLQTFCN 570 580 590 600 610 620 gi|739 LAIGCRRPRDGLQLLADMKKSQMTPNTHIYSTLINAALKKLDYTYLIDILKDMRQNRVPV 630 640 650 660 670 680 >>gi|109066083|ref|XP_001111767.1| PREDICTED: similar to (775 aa) initn: 1157 init1: 938 opt: 1044 Z-score: 1214.0 bits: 234.5 E(): 6.5e-59 Smith-Waterman score: 1336; 47.957% identity (60.213% similar) in 563 aa overlap (7-411:69-629) 10 20 30 mKIAA0 NAQSCRGSRQPAMDLLRLSRLFSGPRPLGLSVLQHL :. .: :.:.::.:::: ::.:: ::::: gi|109 GRKCPNQDWSQGRPRRETEAAKVCVERGPGGTGKPEMNLMRLTRLFSRARPMGLFVLQHL 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA0 DLVGSTRWTGGREGPER-LRAAFCGSSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEE-- : :.::.::::: : . ::: .::: ::::. . .. .:: :: :. ...: ::: gi|109 DPC-SARWAGGREGLMRPVWAAFSSSSSQLPLGQEHLENTGSLGSDPSHSNSAAMQEEDE 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA0 AEEESFGSLSGKFSSRRIFHKSTAQLYNLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQC ::::::.:: :.::::.:::::::..::...:: : :: ::. :.::::: ::::.:: gi|109 EEEESFGTLSDKYSSRRLFHKSTAQFHNLRFREQREEPEEPEPKLWQGRRNTPYWYFLQC 160 170 180 190 200 210 160 mKIAA0 KRLIKEGKV--------------------------------------------------- ::::::::. gi|109 KRLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFKLYNQMKKRD 220 230 240 250 260 270 mKIAA0 ------------------------------------------------------------ gi|109 LEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQAKNIELNLKTYHALLKMAAKCADL 280 290 300 310 320 330 170 180 mKIAA0 ----------------------------------------LQVWRQMLSLGIKPSRHGYN ::::: :::::..::: .:: gi|109 RMCLDVFKEIIHKGHIVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYN 340 350 360 370 380 390 190 200 210 220 230 240 mKIAA0 LLLEAARDCGLGDPEVASRLLLTSQEENILLPPPKGRHMAGRKVQAKTVHGVS-LRHVEA ::: ::::::::::.:::.::: .:: .: :: ::. : .:::. . .: . :::: gi|109 LLLAAARDCGLGDPQVASELLLKPSEEATVLQPPVGRQRPRRTAQAKAGNRMSAVLHVEA 400 410 420 430 440 450 250 260 270 280 290 300 mKIAA0 LERQLFLEPSQKLEGPPALPEARVTSRTQPEVETTAEPGHTVALTPLAPKPTHLELEVSL ::::::::::: : ::: :::: ...:::::: :::.::::: :.: :: .::::.: gi|109 LERQLFLEPSQAL-GPPEPQEARVPGKAQPEVETKAEPSHTVALPPVALKPPPVELEVNL 460 470 480 490 500 510 310 320 330 340 350 360 mKIAA0 LSLGTLSPAVVSFGTVATPADRLALMGGLEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSA :. :.. :.:::::::.::::::::.:::::::.::.:: ::::.:::::::::: :: gi|109 LTPGAVPPTVVSFGTVSTPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSP 520 530 540 550 560 570 370 380 390 400 410 mKIAA0 AESSLLSVLDRHRVEADVTFFNTLIRKKSKLGDLEGAK--VRGLSTRG-SPSL ::: ::..::.:.::::.::::::.::::::::::::: . :. :: :.: gi|109 AESLLLALLDKHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLA 580 590 600 610 620 630 gi|109 IGCHKPKDGLQLLTDMKKSQVIPNTHIYSALINAAVRKLDYTYLINILKDMKQNRVPVNE 640 650 660 670 680 690 >>gi|62287490|sp|Q5R655.1|PTCD1_PONAB RecName: Full=Pent (698 aa) initn: 946 init1: 946 opt: 1039 Z-score: 1208.8 bits: 233.4 E(): 1.3e-58 Smith-Waterman score: 1290; 47.207% identity (60.180% similar) in 555 aa overlap (13-411:1-553) 10 20 30 40 50 mKIAA0 NAQSCRGSRQPAMDLLRLSRLFSGPRPLGLSVLQHLDLVGSTRWTGGREGPER-LRAAFC ::..::.:::: ::.:: .::::: .::.::::: : . : : gi|622 MDFVRLARLFSRARPMGLFILQHLDPC-RARWAGGREGLMRPVWAPFG 10 20 30 40 60 70 80 90 100 110 mKIAA0 GSSSPLPLGSGNQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKSTAQL .::: ::::. :.. .:: :: :. ...: ::: ::::::.:: :.::::.:.:::::. gi|622 SSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEESFGALSDKYSSRRLFRKSTAQF 50 60 70 80 90 100 120 130 140 150 160 mKIAA0 YNLQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKV----------------- .::.. :. :. . ::. :::.::: ::::.::::::::::. gi|622 HNLRFGERRDEQTKPEPKLWRGQRNTPYWYFLQCKRLIKEGKLVEALDLFERQMLKEERL 110 120 130 140 150 160 mKIAA0 ------------------------------------------------------------ gi|622 QPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQ 170 180 190 200 210 220 mKIAA0 ------------------------------------------------------------ gi|622 SALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLL 230 240 250 260 270 280 170 180 190 200 mKIAA0 --------------LQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDPEVASRLLLTSQE ::::: :::::..::: .::::: ::::::::::.:::.::: .: gi|622 MGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPRE 290 300 310 320 330 340 210 220 230 240 250 260 mKIAA0 ENILLPPPKGRHMAGRKVQAKTVHGVS-LRHVEALERQLFLEPSQKLEGPPALPEARVTS : .: :: .:.. : .:::. . .: . :::::::::::: :: : ::: ::::: : gi|622 EATVLQPPVSRQQPRRTAQAKAGNLMSAMLHVEALERQLFLETSQAL-GPPEPPEARVPS 350 360 370 380 390 400 270 280 290 300 310 320 mKIAA0 RTQPEVETTAEPGHTVALTPLAPKPTHLELEVSLLSLGTLSPAVVSFGTVATPADRLALM ..::::.: :::.::.::::.: :: :::::.::. :.. :.:::::::.::::::::. gi|622 KAQPEVDTKAEPSHTAALTPVALKPPPLELEVNLLTPGAVPPTVVSFGTVTTPADRLALV 410 420 430 440 450 460 330 340 350 360 370 380 mKIAA0 GGLEGFLGKMTEHGLQPDIKTLTLLAEVVEPGSAAESSLLSVLDRHRVEADVTFFNTLIR :::::::.::.:: ::::.:::::::::: :: ::: ::..::.:.::::.::::::.: gi|622 GGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVR 470 480 490 500 510 520 390 400 410 mKIAA0 KKSKLGDLEGAK--VRGLSTRG-SPSL :::::::::::: . :. :: :.: gi|622 KKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNSH 530 540 550 560 570 580 >>gi|74355886|gb|AAI03662.1| PTCD1 protein [Homo sapiens (482 aa) initn: 922 init1: 922 opt: 1029 Z-score: 1199.4 bits: 231.1 E(): 4.2e-58 Smith-Waterman score: 1029; 65.660% identity (81.887% similar) in 265 aa overlap (153-411:74-337) 130 140 150 160 170 180 mKIAA0 QLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEG--KVLQVWRQMLSLGIKPSRHG : . : : .::::: :::::..::: . gi|743 DLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDS 50 60 70 80 90 100 190 200 210 220 230 mKIAA0 YNLLLEAARDCGLGDPEVASRLLLTSQEENILLPPPKGRHMAGRKVQAKTVHGVS-LRHV ::::: ::::::::::.:::.::: .:: .: :: .:. : .:::. . .: . :: gi|743 YNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHV 110 120 130 140 150 160 240 250 260 270 280 290 mKIAA0 EALERQLFLEPSQKLEGPPALPEARVTSRTQPEVETTAEPGHTVALTPLAPKPTHLELEV ::::::::::::: : ::: ::::: ...::::.: :::.::.::: .: :: .:::: gi|743 EALERQLFLEPSQAL-GPPEPPEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEV 170 180 190 200 210 220 300 310 320 330 340 350 mKIAA0 SLLSLGTLSPAVVSFGTVATPADRLALMGGLEGFLGKMTEHGLQPDIKTLTLLAEVVEPG .::. :.. :.:::::::.::::::::.:::::::.::.:: ::::.:::::::::: : gi|743 NLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESG 230 240 250 260 270 280 360 370 380 390 400 410 mKIAA0 SAAESSLLSVLDRHRVEADVTFFNTLIRKKSKLGDLEGAK--VRGLSTRG-SPSL : ::: ::..::.:.::::.::::::.::::::::::::: . :. :: :.: gi|743 SPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCN 290 300 310 320 330 340 gi|743 LAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPV 350 360 370 380 390 400 411 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 14:40:30 2009 done: Sun Mar 15 14:47:09 2009 Total Scan time: 903.160 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]