FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0883.ptfa, 389 aa
 vs ./tmplib.26680 library

1768628 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.6278+/-0.00437; mu= 16.4094+/- 0.293
 mean_var=87.5219+/-19.979, 0's: 0 Z-trim: 3  B-trim: 144 in 1/35
 Lambda= 0.1371

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1934  ( 447 res)   mbp21165                   ( 447)  857  179 5.2e-46


>>mKIAA1934  ( 447 res)   mbp21165                        (447 aa)
 initn: 826 init1: 480 opt: 857  Z-score: 918.3  bits: 178.9 E(): 5.2e-46
Smith-Waterman score: 857;  38.674% identity (39.886% ungapped) in 362 aa overlap (23-382:3-355)

               10        20        30        40        50        60
mKIAA0 RDRAFGPRGFETSWRPSPEAYPGTMAVALLEEWCKIMGVDVQKSLLVVDIPVDCGEPEIQ
                             ::::::::..::: : .: .:..:.: :::.  :  :.
mKIAA1                     REGTMAVALLDDWCKGMDLDPKKAVLIVGIPVQYTEAAIN
                                   10        20        30        40

               70        80        90       100       110       120
mKIAA0 TVLQEALKCVGSYRLLGKIFQKQDNTSVVLVELMEDTDMSVVPSEVQGKGGVWKVIFKTP
        .:.:.:  . .:...:..:...:....::.:: : .:....:... ..::.:.:. :  
mKIAA1 DALKEGLPPLCAYKVIGRMFRREDEAKAVLIELPEVVDYTMMPTHIPAEGGAWEVVVKPR
               50        60        70        80        90       100

              130       140       150       160       170       180
mKIAA0 NQDTEFLQRLNLFLEKEGQTVAGMFRALKHEGVSPATPPCTSPELLAHLTGQAMVHGQRP
       . : ::...:  ::. ::. .. . .::   : :  : :  . ::      :   .: . 
mKIAA1 SPDDEFMNKLIYFLRDEGRRIVDVAKAL---GFS--TVPTGKIELKN--LDQDKPKGLKS
              110       120          130         140         150   

                190       200       210       220       230        
mKIAA0 LLPVKYC--KMRIFSGSTAAAPEEEPFEVWLEQATEIAKEWPIPEAEKKRWVAESLRGPA
       :   . :  :...::::   .: :: ::.:::..::. . : . : :::. . ::::: :
mKIAA1 LCNNSTCYKKLKVFSGSPFPGPGEESFETWLEEVTELMQLWQVSEREKKQCLLESLRGSA
           160       170       180       190       200       210   

      240       250       260       270       280       290        
mKIAA0 LDLMHIVQADNPSISVGECLEAFKQVFGSTESRRTSQVKYLRTYQQEGEKISAYVLRLET
       :..:. . ..: :..: .::.:.:..::. :. .. : ..:.. :. .::.: :.:::: 
mKIAA1 LSIMQALWTSNDSLTVEQCLKALKHIFGNKEDSKVLQFRFLQSSQKPAEKVSDYLLRLEP
           220       230       240       250       260       270   

      300       310       320       330       340       350        
mKIAA0 LLRRAVEKRAIPRNIADQVRLEQVMAGANLGNVLWCRLQELKDQGPLPTFLQLMKVIREE
       ::..::..  .  . ::..::..:.. ... . :  .:. : .::  ::::.:::. :.:
mKIAA1 LLQKAVQQSPLSAHSADSIRLKHVLSQVSMTTGLRGKLSLLDQQGCPPTFLELMKLTRDE
           280       290       300       310       320       330   

      360       370       380                                      
mKIAA0 EEEEDAYFEQESREEPGEREGSGCWNNSRNN                             
       :: :..   .:  .:  .:..:.:                                    
mKIAA1 EEWESTVVVEE--QEQVRRDSSACEAANEVVTQAEDSREVSTQTTGEEMTSVKRRRLLWR
           340         350       360       370       380       390 




389 residues in 1 query   sequences
1768628 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:31:07 2006 done: Mon Mar 27 10:31:08 2006
 Scan time:  0.620 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]