FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0068.ptfa, 1279 aa vs ./tmplib.26680 library 1767738 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.0430+/-0.00437; mu= 16.5863+/- 0.293 mean_var=93.4716+/-22.304, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1327 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1168 ( 1259 res) mbg09970 (1259) 7469 1441 0 >>mKIAA1168 ( 1259 res) mbg09970 (1259 aa) initn: 7466 init1: 5148 opt: 7469 Z-score: 7721.0 bits: 1440.8 E(): 0 Smith-Waterman score: 7469; 86.894% identity (86.963% ungapped) in 1259 aa overlap (21-1279:1-1258) 10 20 30 40 50 60 mKIAA0 RPAQVTHWGRKAPGARPGQPKAAQTRMAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPS :.. . :...:::::::::::::::::::::::::::::: mKIAA1 KTGAAAMTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPS 10 20 30 40 70 80 90 100 110 120 mKIAA0 SLLYQPNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIP :..:: ::.:::::::::::::::::::::::::::::::::..:::::::::::::::: mKIAA1 SIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGHDYAVMLYTWRSCSRAIP 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVS :::::::::::::::::::::::::::::.::::::.::::::.::.::::::::::::: mKIAA1 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEVKRLCHAERRKDFVS 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 EAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: mKIAA1 EAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 ANHNKITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLM ::::.::: :.:::::: :::::::::::.:::::::.:::::::::::::::::::::: mKIAA1 ANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLM 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 DGSVSNIYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTC ::.::::::::::::::::::::.:::::::::::::::::::::.::::::::::.::: mKIAA1 DGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIETSAHYEENKSKWTC 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 ASSSSSPQYNICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRKLFDLA ..:: ::::::::::.:::.::.::::::::::::::::::: ..::.: :::.::::: mKIAA1 TQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSG-LDSQKSDEEYRELFDLA 350 360 370 380 390 430 440 450 460 470 480 mKIAA0 LQGLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDNAEEYERATRYNYTTEEKFALVEV :.::::::.:::::::::::::::::::. ::::: .:::::::::::::.:::::.::: mKIAA1 LRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEV 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA0 IAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAI :::::::::::::::::::.:::.:.:::::::.:::::::::::..:::::. :::::: mKIAA1 IAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAI 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA0 RKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS :::.:::: :.:: ::: ::::::::.::::::::::::::::::::::::::::::::: mKIAA1 RKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA0 GSKKTLRSSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGR ::::::::::.:: .: :: ::..:::.:::.:.::.::::::::::::::::::::::: mKIAA1 GSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNISEALQQCCDLSQLWFREFFLELTMGR 580 590 600 610 620 630 670 680 690 700 710 720 mKIAA0 RIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTKFNKQFLYDEIEAE ::::::::::::::::::::::: :::::::: ::::::::.::::::.::::::::::: mKIAA1 RIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAE 640 650 660 670 680 690 730 740 750 760 770 780 mKIAA0 VNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETLLKQRH :::::::::::::::::::::.::::.:::::.:.:::: :. : :::::::::::::: mKIAA1 VNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRAECKNYGVIIPYPPSNRYETLLKQRH 700 710 720 730 740 750 790 800 810 820 830 840 mKIAA0 VQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSVVELDGLLEINRMTHKLLSR :::::::::::::::::.::::::::. ::.:::::::::.:::. ::::::.::.:: . mKIAA1 VQLLGRSIDLNRLITQRISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCK 760 770 780 790 800 810 850 860 870 880 890 900 mKIAA0 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE ..::::::::::::::::::::::::::::::::.::::::::::::::::::..::.:: mKIAA1 HMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQE 820 830 840 850 860 870 910 920 930 940 950 960 mKIAA0 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL :::: :.:: ::.::: ::.::: ::.:::::::::::..:::::::::::::::::: mKIAA1 PQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELL 880 890 900 910 920 930 970 980 990 1000 1010 1020 mKIAA0 KVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF :.::::::::::::::::.::::::::::::::::::::::::::::::.::::::: : mKIAA1 KIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVF 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 mKIAA0 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRIHVKEGERVDAKMKRLESKY :.:::::::.::::::::.:: ::::::::::::::::::...:::::....:::::.:: mKIAA1 QSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKY 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 mKIAA0 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP :::::::::::::::::::::::::::::::::::::::::::::::..:.::::::: : mKIAA1 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPP 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 mKIAA0 SNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF .:::::::::::::::::::::::::::::.:::.::::::::.:::: ::::::::::: mKIAA1 TNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRF 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 mKIAA0 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST ..::::::::::..:::::::::::::::..::::.::::.:...::.::.:: . .:. mKIAA1 DLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSS 1180 1190 1200 1210 1220 1230 1270 mKIAA0 PVEHVRCFQPPIHQSLASS ::::::::::::::::.. mKIAA1 TVEHVRCFQPPIHQSLATTC 1240 1250 1279 residues in 1 query sequences 1767738 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:11:35 2006 done: Mon Mar 27 10:11:36 2006 Scan time: 1.100 Display time: 0.160 Function used was FASTA [version 3.4t11 Apr 17, 2002]