FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA0363.ptfa, 1445 aa
vs ./tmplib.26680 library
1767572 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 11.1784+/-0.00765; mu= -8.0980+/- 0.504
mean_var=451.5395+/-113.081, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36
Lambda= 0.0604
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 40, opt: 28, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA4059 ( 219 res) mpk01276 ( 219) 765 81 2.5e-16
>>mKIAA4059 ( 219 res) mpk01276 (219 aa)
initn: 542 init1: 542 opt: 765 Z-score: 385.5 bits: 81.2 E(): 2.5e-16
Smith-Waterman score: 765; 62.273% identity (64.929% ungapped) in 220 aa overlap (1228-1445:7-219)
1200 1210 1220 1230 1240 1250
mKIAA0 EFPALEQKDEDSLEEDAQRAPGSGQRWESHGESSSELDEYLAPPPDAQRTPGSGQRSESH
::.. . :. : ::: .:.:
mKIAA4 SPHKMPGEATETVPATEQELPQPQAETGSGTESDSD
10 20 30
1260 1270 1280 1290 1300 1310
mKIAA0 GESSSELGEQDLSPQKSQCPAQGPAGS--NEETIAKAKQSRSEKKARKAMSKLGLRQIQG
:: :: ::: : : . :: :.. .:: ..::::::::::::::::::::::. :
mKIAA4 -ESVPELEEQD-STQTATQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTG
40 50 60 70 80 90
1320 1330 1340 1350 1360 1370
mKIAA0 VTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPS
:::.::.:::::::::.::::.::::::::.:::::::::::::.. :::::::: .:
mKIAA4 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAV
100 110 120 130 140 150
1380 1390 1400 1410 1420 1430
mKIAA0 ALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAVRALKDNHSD
. . : . : :. : :: :::.:.:.: .::::::.::::.:::::::::.: .:
mKIAA4 SNIQENTQTPTVQEESEE-----EEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSND
160 170 180 190 200
1440
mKIAA0 IVNAIMELTM
::::::::::
mKIAA4 IVNAIMELTM
210
1445 residues in 1 query sequences
1767572 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:18:54 2006 done: Mon Mar 27 10:18:55 2006
Scan time: 1.250 Display time: 0.020
Function used was FASTA [version 3.4t11 Apr 17, 2002]