# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj60316.fasta.nr -Q ../query/mKIAA0892.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0892, 118 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921448 sequences Expectation_n fit: rho(ln(x))= 5.0931+/-0.000182; mu= 5.3183+/- 0.010 mean_var=59.7182+/-11.838, 0's: 32 Z-trim: 34 B-trim: 1467 in 1/64 Lambda= 0.165967 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|34532656|dbj|BAC86497.1| unnamed protein produc ( 189) 801 199.4 1.7e-49 gi|5817202|emb|CAB53698.1| hypothetical protein [H ( 217) 801 199.4 1.9e-49 gi|19484035|gb|AAH23401.1| 9130404D08Rik protein [ ( 218) 801 199.4 1.9e-49 gi|73985863|ref|XP_864901.1| PREDICTED: similar to ( 596) 801 199.7 4.4e-49 gi|73985867|ref|XP_541923.2| PREDICTED: similar to ( 612) 801 199.7 4.5e-49 gi|114676262|ref|XP_512526.2| PREDICTED: hypotheti ( 612) 801 199.7 4.5e-49 gi|26339980|dbj|BAC33653.1| unnamed protein produc ( 618) 801 199.7 4.5e-49 gi|26349485|dbj|BAC38382.1| unnamed protein produc ( 618) 801 199.7 4.5e-49 gi|219841858|gb|AAI44991.1| 9130404D08Rik protein ( 619) 801 199.7 4.5e-49 gi|148696826|gb|EDL28773.1| RIKEN cDNA 9130404D08 ( 634) 801 199.7 4.6e-49 gi|126323432|ref|XP_001366119.1| PREDICTED: hypoth ( 604) 794 198.0 1.4e-48 gi|118103253|ref|XP_425908.2| PREDICTED: hypotheti ( 662) 794 198.0 1.5e-48 gi|149633651|ref|XP_001513513.1| PREDICTED: hypoth ( 609) 789 196.8 3.3e-48 gi|169642083|gb|AAI60796.1| LOC548681 protein [Xen ( 604) 772 192.7 5.5e-47 gi|194294279|gb|ACF40224.1| sister chromatid cohes ( 607) 772 192.7 5.5e-47 gi|62860242|ref|NP_001015927.1| hypothetical prote ( 608) 772 192.7 5.5e-47 gi|47216668|emb|CAG04866.1| unnamed protein produc ( 589) 748 187.0 2.9e-45 gi|4106983|gb|AAD03161.1| R29828_1 [Homo sapiens] ( 514) 629 158.4 9.7e-37 gi|73985865|ref|XP_864923.1| PREDICTED: similar to ( 535) 629 158.5 1e-36 gi|215504266|gb|EEC13760.1| conserved hypothetical ( 579) 489 124.9 1.3e-26 gi|115675610|ref|XP_784063.2| PREDICTED: hypotheti ( 596) 489 125.0 1.4e-26 gi|91086385|ref|XP_974771.1| PREDICTED: similar to ( 588) 467 119.7 5.1e-25 gi|212513185|gb|EEB15813.1| conserved hypothetical ( 593) 462 118.5 1.2e-24 gi|66512196|ref|XP_394668.2| PREDICTED: similar to ( 594) 459 117.8 2e-24 gi|156544788|ref|XP_001606324.1| PREDICTED: simila ( 594) 457 117.3 2.7e-24 gi|210111251|gb|EEA59059.1| hypothetical protein B ( 513) 443 113.9 2.5e-23 gi|210092122|gb|EEA40356.1| hypothetical protein B ( 540) 443 113.9 2.6e-23 gi|193625033|ref|XP_001943219.1| PREDICTED: simila ( 597) 420 108.4 1.3e-21 gi|108871851|gb|EAT36076.1| conserved hypothetical ( 620) 395 102.5 8.3e-20 gi|157012821|gb|EAA01134.3| AGAP001363-PA [Anophel ( 620) 388 100.8 2.7e-19 gi|167873800|gb|EDS37183.1| conserved hypothetical ( 616) 383 99.6 6.1e-19 gi|190626620|gb|EDV42144.1| GF17837 [Drosophila an ( 639) 367 95.8 8.9e-18 gi|193917262|gb|EDW16129.1| GI22403 [Drosophila mo ( 625) 366 95.5 1e-17 gi|194143172|gb|EDW59575.1| GJ10962 [Drosophila vi ( 621) 360 94.1 2.8e-17 gi|194112191|gb|EDW34234.1| GL22140 [Drosophila pe ( 620) 356 93.1 5.4e-17 gi|194199297|gb|EDX12873.1| GD18992 [Drosophila si ( 584) 352 92.1 1e-16 gi|194183892|gb|EDW97503.1| GE24275 [Drosophila ya ( 632) 352 92.2 1.1e-16 gi|7299968|gb|AAF55140.1| CG4203 [Drosophila melan ( 632) 352 92.2 1.1e-16 gi|190651707|gb|EDV48962.1| GG16893 [Drosophila er ( 632) 352 92.2 1.1e-16 gi|156211412|gb|EDO32521.1| predicted protein [Nem ( 611) 351 91.9 1.2e-16 gi|193893963|gb|EDV92829.1| GH18976 [Drosophila gr ( 623) 351 91.9 1.2e-16 gi|194120061|gb|EDW42104.1| GM24202 [Drosophila se ( 632) 351 91.9 1.3e-16 gi|56756122|gb|AAW26239.1| SJCHGC07222 protein [Sc ( 109) 247 66.6 8.9e-10 >>gi|34532656|dbj|BAC86497.1| unnamed protein product [H (189 aa) initn: 801 init1: 801 opt: 801 Z-score: 1045.1 bits: 199.4 E(): 1.7e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:72-189) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|345 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|345 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 110 120 130 140 150 160 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|345 NLITWTDGPPPVQFQAQNGPNTSLASLL 170 180 >>gi|5817202|emb|CAB53698.1| hypothetical protein [Homo (217 aa) initn: 801 init1: 801 opt: 801 Z-score: 1044.2 bits: 199.4 E(): 1.9e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:100-217) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|581 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 70 80 90 100 110 120 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|581 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 130 140 150 160 170 180 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|581 NLITWTDGPPPVQFQAQNGPNTSLASLL 190 200 210 >>gi|19484035|gb|AAH23401.1| 9130404D08Rik protein [Mus (218 aa) initn: 801 init1: 801 opt: 801 Z-score: 1044.2 bits: 199.4 E(): 1.9e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:101-218) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|194 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 80 90 100 110 120 130 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 140 150 160 170 180 190 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|194 NLITWTDGPPPVQFQAQNGPNTSLASLL 200 210 >>gi|73985863|ref|XP_864901.1| PREDICTED: similar to CG4 (596 aa) initn: 801 init1: 801 opt: 801 Z-score: 1037.5 bits: 199.7 E(): 4.4e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:479-596) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|739 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 510 520 530 540 550 560 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|739 NLITWTDGPPPVQFQAQNGPNTSLASLL 570 580 590 >>gi|73985867|ref|XP_541923.2| PREDICTED: similar to CG4 (612 aa) initn: 801 init1: 801 opt: 801 Z-score: 1037.4 bits: 199.7 E(): 4.5e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:495-612) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|739 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 470 480 490 500 510 520 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 530 540 550 560 570 580 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|739 NLITWTDGPPPVQFQAQNGPNTSLASLL 590 600 610 >>gi|114676262|ref|XP_512526.2| PREDICTED: hypothetical (612 aa) initn: 801 init1: 801 opt: 801 Z-score: 1037.4 bits: 199.7 E(): 4.5e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:495-612) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|114 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 470 480 490 500 510 520 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 530 540 550 560 570 580 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|114 NLITWTDGPPPVQFQAQNGPNTSLASLL 590 600 610 >>gi|26339980|dbj|BAC33653.1| unnamed protein product [M (618 aa) initn: 801 init1: 801 opt: 801 Z-score: 1037.3 bits: 199.7 E(): 4.5e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:501-618) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|263 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 480 490 500 510 520 530 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 540 550 560 570 580 590 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|263 NLITWTDGPPPVQFQAQNGPNTSLASLL 600 610 >>gi|26349485|dbj|BAC38382.1| unnamed protein product [M (618 aa) initn: 801 init1: 801 opt: 801 Z-score: 1037.3 bits: 199.7 E(): 4.5e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:501-618) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|263 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 480 490 500 510 520 530 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 540 550 560 570 580 590 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|263 NLITWTDGPPPVQFQAQNGPNTSLASLL 600 610 >>gi|219841858|gb|AAI44991.1| 9130404D08Rik protein [Mus (619 aa) initn: 801 init1: 801 opt: 801 Z-score: 1037.3 bits: 199.7 E(): 4.5e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:502-619) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|219 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 480 490 500 510 520 530 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 540 550 560 570 580 590 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|219 NLITWTDGPPPVQFQAQNGPNTSLASLL 600 610 >>gi|148696826|gb|EDL28773.1| RIKEN cDNA 9130404D08 [Mus (634 aa) initn: 801 init1: 801 opt: 801 Z-score: 1037.1 bits: 199.7 E(): 4.6e-49 Smith-Waterman score: 801; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:517-634) 10 20 30 mKIAA0 RLTACSLVLLGHIFYVLGNHRESNNMVVPA :::::::::::::::::::::::::::::: gi|148 GLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPA 490 500 510 520 530 540 40 50 60 70 80 90 mKIAA0 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEH 550 560 570 580 590 600 100 110 mKIAA0 NLITWTDGPPPVQFQAQNGPNTSLASLL :::::::::::::::::::::::::::: gi|148 NLITWTDGPPPVQFQAQNGPNTSLASLL 610 620 630 118 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 23:55:45 2009 done: Mon Mar 16 23:59:31 2009 Total Scan time: 536.360 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]