# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj58259.fasta.nr -Q ../query/mKIAA4225.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4225, 868 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919389 sequences Expectation_n fit: rho(ln(x))= 5.2089+/-0.000186; mu= 13.5982+/- 0.010 mean_var=80.9035+/-15.634, 0's: 45 Z-trim: 53 B-trim: 229 in 1/65 Lambda= 0.142590 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|49248072|gb|AAH49780.2| Sema domain, immunoglob ( 861) 5771 1197.5 0 gi|8134689|sp|O09126.1|SEM4D_MOUSE RecName: Full=S ( 861) 5753 1193.8 0 gi|74210023|dbj|BAE21302.1| unnamed protein produc ( 814) 5422 1125.7 0 gi|109504697|ref|XP_225215.4| PREDICTED: similar t ( 860) 5376 1116.2 0 gi|26353700|dbj|BAC40480.1| unnamed protein produc ( 799) 5351 1111.1 0 gi|109505501|ref|XP_001053912.1| PREDICTED: simila ( 824) 5104 1060.3 0 gi|8134701|sp|Q92854.1|SEM4D_HUMAN RecName: Full=S ( 862) 5027 1044.4 0 gi|168270916|dbj|BAG10251.1| semaphorin-4D precurs ( 862) 5022 1043.4 0 gi|68533115|dbj|BAE06112.1| SEMA4D variant protein ( 870) 5022 1043.4 0 gi|32493365|gb|AAH54500.1| Sema domain, immunoglob ( 862) 5018 1042.6 0 gi|114625455|ref|XP_001141771.1| PREDICTED: semaph ( 928) 5011 1041.2 0 gi|109112122|ref|XP_001090890.1| PREDICTED: semaph ( 862) 4998 1038.5 0 gi|119583171|gb|EAW62767.1| hCG1985052, isoform CR ( 853) 4878 1013.8 0 gi|194041392|ref|XP_001928494.1| PREDICTED: simila ( 865) 4770 991.6 0 gi|194224945|ref|XP_001493931.2| PREDICTED: simila ( 937) 4620 960.7 0 gi|73947068|ref|XP_533551.2| PREDICTED: similar to ( 923) 4589 954.4 0 gi|149044998|gb|EDL98084.1| sema domain, immunoglo ( 695) 4469 929.6 0 gi|37927181|pdb|1OLZ|A Chain A, The Ligand-Binding ( 663) 3845 801.2 0 gi|118104200|ref|XP_424426.2| PREDICTED: similar t ( 845) 3835 799.2 0 gi|224088665|ref|XP_002190148.1| PREDICTED: sema d ( 855) 3821 796.3 0 gi|214010220|ref|NP_001135759.1| semaphorin 4D iso ( 738) 3344 698.2 3.5e-198 gi|119583169|gb|EAW62765.1| hCG1985052, isoform CR ( 687) 3339 697.1 6.7e-198 gi|119583170|gb|EAW62766.1| hCG1985052, isoform CR ( 738) 3339 697.1 7.1e-198 gi|146186476|gb|AAI40510.1| SEMA4D protein [Bos ta ( 735) 3236 675.9 1.7e-191 gi|126333806|ref|XP_001375624.1| PREDICTED: simila ( 678) 3094 646.7 9.8e-183 gi|221045602|dbj|BAH14478.1| unnamed protein produ ( 548) 2958 618.6 2.2e-174 gi|194374551|dbj|BAG57171.1| unnamed protein produ ( 548) 2942 615.3 2.2e-173 gi|119583172|gb|EAW62768.1| hCG1985052, isoform CR ( 534) 2934 613.7 6.7e-173 gi|189442633|gb|AAI67391.1| Unknown (protein for M ( 729) 2630 551.3 5.6e-154 gi|189540169|ref|XP_001921510.1| PREDICTED: simila ( 673) 2412 506.4 1.7e-140 gi|47219866|emb|CAF97136.1| unnamed protein produc ( 835) 2410 506.1 2.6e-140 gi|94732427|emb|CAK04062.1| novel protein similar ( 775) 1842 389.2 3.7e-105 gi|50417869|gb|AAH78280.1| Sema4e protein [Danio r ( 762) 1752 370.7 1.4e-99 gi|8134727|sp|Q9YHX4.1|SEM4E_DANRE RecName: Full=S ( 766) 1752 370.7 1.4e-99 gi|73970098|ref|XP_538464.2| PREDICTED: similar to ( 849) 1752 370.7 1.5e-99 gi|134054522|emb|CAM73255.1| sema4e [Danio rerio] ( 766) 1747 369.6 2.8e-99 gi|160773680|gb|AAI55169.1| Sema4e protein [Danio ( 766) 1741 368.4 6.6e-99 gi|126303453|ref|XP_001379915.1| PREDICTED: simila ( 832) 1738 367.8 1.1e-98 gi|8134699|sp|Q64151.1|SEM4C_MOUSE RecName: Full=S ( 834) 1736 367.4 1.4e-98 gi|148682548|gb|EDL14495.1| mCG17761, isoform CRA_ ( 914) 1736 367.4 1.5e-98 gi|109103896|ref|XP_001100467.1| PREDICTED: semaph ( 833) 1729 366.0 3.9e-98 gi|149046375|gb|EDL99268.1| sema domain, immunoglo ( 834) 1710 362.1 5.8e-97 gi|194671303|ref|XP_604387.4| PREDICTED: similar t ( 833) 1707 361.4 8.9e-97 gi|47606208|sp|Q9C0C4.2|SEM4C_HUMAN RecName: Full= ( 833) 1705 361.0 1.2e-96 gi|37182802|gb|AAQ89201.1| SEMA4C [Homo sapiens] ( 833) 1704 360.8 1.4e-96 gi|119591731|gb|EAW71325.1| sema domain, immunoglo ( 886) 1681 356.1 3.8e-95 gi|50415520|gb|AAH78116.1| Unknown (protein for MG ( 834) 1669 353.6 2e-94 gi|224052725|ref|XP_002196424.1| PREDICTED: sema d ( 826) 1667 353.2 2.7e-94 gi|8134700|sp|Q90665.1|SEM4D_CHICK RecName: Full=S ( 295) 1606 340.3 7.4e-91 gi|114579013|ref|XP_515634.2| PREDICTED: semaphori ( 858) 1596 338.6 6.8e-90 >>gi|49248072|gb|AAH49780.2| Sema domain, immunoglobulin (861 aa) initn: 5771 init1: 5771 opt: 5771 Z-score: 6411.8 bits: 1197.5 E(): 0 Smith-Waterman score: 5771; 100.000% identity (100.000% similar) in 861 aa overlap (8-868:1-861) 10 20 30 40 50 60 mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA4 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA4 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPV 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA4 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA4 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA4 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP 600 610 620 630 640 650 670 680 690 700 710 720 mKIAA4 PSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 PSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVI 660 670 680 690 700 710 730 740 750 760 770 780 mKIAA4 NTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 NTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLG 720 730 740 750 760 770 790 800 810 820 830 840 mKIAA4 KKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 KKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQ 780 790 800 810 820 830 850 860 mKIAA4 RIDELSARDKPFDVKCELKFADSDADGD :::::::::::::::::::::::::::: gi|492 RIDELSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|8134689|sp|O09126.1|SEM4D_MOUSE RecName: Full=Semap (861 aa) initn: 5753 init1: 5753 opt: 5753 Z-score: 6391.8 bits: 1193.8 E(): 0 Smith-Waterman score: 5753; 99.652% identity (99.884% similar) in 861 aa overlap (8-868:1-861) 10 20 30 40 50 60 mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA4 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA4 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: gi|813 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDFEPV 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA4 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA4 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA4 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP 600 610 620 630 640 650 670 680 690 700 710 720 mKIAA4 PSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVI :::::::.:::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|813 PSPTSEDVQTEGSKITSKMPVGSTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVI 660 670 680 690 700 710 730 740 750 760 770 780 mKIAA4 NTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 NTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLG 720 730 740 750 760 770 790 800 810 820 830 840 mKIAA4 KKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 KKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQ 780 790 800 810 820 830 850 860 mKIAA4 RIDELSARDKPFDVKCELKFADSDADGD :::::::::::::::::::::::::::: gi|813 RIDELSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|74210023|dbj|BAE21302.1| unnamed protein product [M (814 aa) initn: 5421 init1: 5421 opt: 5422 Z-score: 6024.1 bits: 1125.7 E(): 0 Smith-Waterman score: 5422; 99.509% identity (99.631% similar) in 814 aa overlap (8-821:1-812) 10 20 30 40 50 60 mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA4 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA4 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPV 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA4 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA4 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA4 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP 600 610 620 630 640 650 670 680 690 700 710 720 mKIAA4 PSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 PSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVI 660 670 680 690 700 710 730 740 750 760 770 780 mKIAA4 NTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 NTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLG 720 730 740 750 760 770 790 800 810 820 830 840 mKIAA4 KKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQ :::::::::::::::::::::::::::::::::::. :: gi|742 KKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPG--PGYGL 780 790 800 810 850 860 mKIAA4 RIDELSARDKPFDVKCELKFADSDADGD >>gi|109504697|ref|XP_225215.4| PREDICTED: similar to se (860 aa) initn: 4364 init1: 4035 opt: 5376 Z-score: 5972.6 bits: 1116.2 E(): 0 Smith-Waterman score: 5376; 93.279% identity (96.987% similar) in 863 aa overlap (8-868:1-860) 10 20 30 40 50 60 mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL :.:::::::::::::.: :::::::::::.::::::::::..:.:::::::.: gi|109 MKMCAPVRGLFLALVAVWRTAVAFAPVPRITWEHGEVGLVNLHEPGIFNYSSL 10 20 30 40 50 70 80 90 100 110 mKIAA4 LMSEDKDTLYVGAREAVFAVNAL-NISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYI ::. :: :.: ::: : .. .: :::::::::::::::::::::::::::: gi|109 LMTSHKDP-PVSASPIGAAVNRLXHVPPSQ--VYWKVSEDKKSKCAEKGKSKQTECLNYI 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA4 RVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGE 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA4 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVY :::::::::::::::::::::::::::::::::::::::::::::.::::: :.:::::: gi|109 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIHKSPDGTEAEDDKVY 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA4 FFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNI ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|109 FFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNI 240 250 260 270 280 290 300 310 320 330 340 350 mKIAA4 LQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSH ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|109 LQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLSTVEAVFSRGKYMQSATVEQSH 300 310 320 330 340 350 360 370 380 390 400 410 mKIAA4 TKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPK 360 370 380 390 400 410 420 430 440 450 460 470 mKIAA4 LIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEP ::::::::::::::::::::::::::::.:::::::::::::.:::::.::::::.: :: gi|109 LIKKDVNYTQIVVDRTQALDGTFYDVMFLSTDRGALHKAVILAKEVHVVEETQLFQDFEP 420 430 440 450 460 470 480 490 500 510 520 530 mKIAA4 VLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTL ::.:::::::::::::::::::::::::::: ::.::::::::::::::::::::::::: gi|109 VLSLLLSSKKGRKFVYAGSNSGVVQAPLAFCGKHSSCEDCVLARDPYCAWSPAIKACVTL 480 490 500 510 520 530 540 550 560 570 580 590 mKIAA4 HQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNG :: :.::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|109 HQAEGSSRGWIQDMSGDTSSCLDKSKESFHQHFFKHGGTAELKCFQKSNLARVVWKFQNG 540 550 560 570 580 590 600 610 620 630 640 650 mKIAA4 ELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRT ::::.:::::::::::::::::::::::::::::::::::::::::::::.:::::: : gi|109 ELKAVSPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHILEVKMVARI 600 610 620 630 640 650 660 670 680 690 700 710 mKIAA4 PPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSS-GTSCEPKM ::::::. ::::::.:::::::::::::::::::::::::::::::::::: :::::::: gi|109 PPSPTSQTAQTEGSRITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSTGTSCEPKM 660 670 680 690 700 710 720 730 740 750 760 770 mKIAA4 VINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALL ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|109 VINTVPQLHSEKTVYLKSSDNRLLMSLLLFLFVLFLCLFSYNCYKGYLPGQCLKFRSALL 720 730 740 750 760 770 780 790 800 810 820 830 mKIAA4 LGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDRED :.:: :::.::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|109 LAKKKPKSEFSDLEQSVKETLVEPGSFSQQNGDQPKPALDTGYETEQDTITSKVPTDRED 780 790 800 810 820 830 840 850 860 mKIAA4 SQRIDELSARDKPFDVKCELKFADSDADGD :::::::::::::::::::::::::::::: gi|109 SQRIDELSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|26353700|dbj|BAC40480.1| unnamed protein product [M (799 aa) initn: 5351 init1: 5351 opt: 5351 Z-score: 5945.3 bits: 1111.1 E(): 0 Smith-Waterman score: 5351; 99.875% identity (99.875% similar) in 799 aa overlap (70-868:1-799) 40 50 60 70 80 90 mKIAA4 EHGEVGLVQFHKPGIFNYSALLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSED :::::::::::::::::::::::::::::: gi|263 YVGAREAVFAVNALNISEKQHEVYWKVSED 10 20 30 100 110 120 130 140 150 mKIAA4 KKSKCAEKGKSKQTECLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDG ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|263 KKSKCAEKGKSKQTECLNYIRVLQPLSRTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 KGRCPFDPAHSYTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 KGRCPFDPAHSYTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFV 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 FADVIQKSPDGPEGEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 FADVIQKSPDGPEGEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWT 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 SFLKARLICSKPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 SFLKARLICSKPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLAT 220 230 240 250 260 270 340 350 360 370 380 390 mKIAA4 VEAVFSRGKYMQSATVEQSHTKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VEAVFSRGKYMQSATVEQSHTKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQ 280 290 300 310 320 330 400 410 420 430 440 450 mKIAA4 FVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 FVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAV 340 350 360 370 380 390 460 470 480 490 500 510 mKIAA4 ILTKEVHVIEETQLFRDSEPVLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ILTKEVHVIEETQLFRDSEPVLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDC 400 410 420 430 440 450 520 530 540 550 560 570 mKIAA4 VLARDPYCAWSPAIKACVTLHQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VLARDPYCAWSPAIKACVTLHQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTA 460 470 480 490 500 510 580 590 600 610 620 630 mKIAA4 ELKCFQKSNLARVVWKFQNGELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ELKCFQKSNLARVVWKFQNGELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRN 520 530 540 550 560 570 640 650 660 670 680 690 mKIAA4 KTVSQLLAKHVLEVKMVPRTPPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 KTVSQLLAKHVLEVKMVPRTPPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSP 580 590 600 610 620 630 700 710 720 730 740 750 mKIAA4 RAATLPPKSSSGTSCEPKMVINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 RAATLPPKSSSGTSCEPKMVINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSY 640 650 660 670 680 690 760 770 780 790 800 810 mKIAA4 NCYKGYLPGQCLKFRSALLLGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 NCYKGYLPGQCLKFRSALLLGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDT 700 710 720 730 740 750 820 830 840 850 860 mKIAA4 GYETEQDTITSKVPTDREDSQRIDELSARDKPFDVKCELKFADSDADGD ::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 GYETEQDTITSKVPTDREDSQRIDELSARDKPFDVKCELKFADSDADGD 760 770 780 790 >>gi|109505501|ref|XP_001053912.1| PREDICTED: similar to (824 aa) initn: 4092 init1: 4092 opt: 5104 Z-score: 5670.5 bits: 1060.3 E(): 0 Smith-Waterman score: 5237; 91.531% identity (94.432% similar) in 862 aa overlap (8-868:1-824) 10 20 30 40 50 60 mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL :.:::::::::::::.: :::::::::::.:::::. gi|109 MKMCAPVRGLFLALVAVWRTAVAFAPVPRITWEHGD----------------- 10 20 30 70 80 90 100 110 120 mKIAA4 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR ::.:::::::::::::::::::::::::::::::::::: gi|109 ---------------------ALDISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR 40 50 60 70 130 140 150 160 170 180 mKIAA4 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL 80 90 100 110 120 130 190 200 210 220 230 240 mKIAA4 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF ::::::::::::::::::::::::::::::::::::::::::::.::::: :.::::::: gi|109 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIHKSPDGTEAEDDKVYF 140 150 160 170 180 190 250 260 270 280 290 300 mKIAA4 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|109 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNIL 200 210 220 230 240 250 310 320 330 340 350 360 mKIAA4 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|109 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLSTVEAVFSRGKYMQSATVEQSHT 260 270 280 290 300 310 370 380 390 400 410 420 mKIAA4 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL 320 330 340 350 360 370 430 440 450 460 470 480 mKIAA4 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPV :::::::::::::::::::::::::::.:::::::::::::.:::::.::::::.: ::: gi|109 IKKDVNYTQIVVDRTQALDGTFYDVMFLSTDRGALHKAVILAKEVHVVEETQLFQDFEPV 380 390 400 410 420 430 490 500 510 520 530 540 mKIAA4 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH :.:::::::::::::::::::::::::::: ::.:::::::::::::::::::::::::: gi|109 LSLLLSSKKGRKFVYAGSNSGVVQAPLAFCGKHSSCEDCVLARDPYCAWSPAIKACVTLH 440 450 460 470 480 490 550 560 570 580 590 600 mKIAA4 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE : :.::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|109 QAEGSSRGWIQDMSGDTSSCLDKSKESFHQHFFKHGGTAELKCFQKSNLARVVWKFQNGE 500 510 520 530 540 550 610 620 630 640 650 660 mKIAA4 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP :::.:::::::::::::::::::::::::::::::::::::::::::::.:::::: : : gi|109 LKAVSPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHILEVKMVARIP 560 570 580 590 600 610 670 680 690 700 710 mKIAA4 PSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSS-GTSCEPKMV :::::. ::::::.:::::::::::::::::::::::::::::::::::: ::::::::: gi|109 PSPTSQTAQTEGSRITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSTGTSCEPKMV 620 630 640 650 660 670 720 730 740 750 760 770 mKIAA4 INTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLL :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|109 INTVPQLHSEKTVYLKSSDNRLLMSLLLFLFVLFLCLFSYNCYKGYLPGQCLKFRSALLL 680 690 700 710 720 730 780 790 800 810 820 830 mKIAA4 GKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDS .:: :::.::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|109 AKKKPKSEFSDLEQSVKETLVEPGSFSQQNGDQPKPALDTGYETEQDTITSKVPTDREDS 740 750 760 770 780 790 840 850 860 mKIAA4 QRIDELSARDKPFDVKCELKFADSDADGD ::::::::::::::::::::::::::::: gi|109 QRIDELSARDKPFDVKCELKFADSDADGD 800 810 820 >>gi|8134701|sp|Q92854.1|SEM4D_HUMAN RecName: Full=Semap (862 aa) initn: 4057 init1: 4057 opt: 5027 Z-score: 5584.6 bits: 1044.4 E(): 0 Smith-Waterman score: 5027; 85.499% identity (94.316% similar) in 862 aa overlap (8-868:1-862) 10 20 30 40 50 60 mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL ::::.:.:::..::.:.. ::.::::.::.:::: :: :::::.: :.::::: gi|813 MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSAL 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR :.::::::::.::::::::::::::::::::::::::::::.:::::::::::::::::: gi|813 LLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYIR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL ::::::.:::::::::::::.::::::::::::::.:::::::::::::::::::: ::: gi|813 VLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGEL 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF ::::::::::::::::::::::::::::::::::::::::::::.::::.:.::::.::: gi|813 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYF 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL :::::::::::::...:::.:::::::::::::::::::::::::::::.::::::::.: gi|813 FFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNVL 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT .::::::.:::: :::::.::::::::::::::::.:.:.: :::.::::::.::::::: gi|813 RDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYMQSTTVEQSHT 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA4 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL :::::::::: :::::::::::::::::::::::::::::::::::::::::::::::.: gi|813 KWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPRL 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA4 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPV ::::::::::::::::::::: :::::.::::::::::. : . ::.:::::::.: ::: gi|813 IKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPV 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA4 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH ::::::::: .:::::::::::::::::: :::.:::::::::::::::: .::.:: gi|813 QTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALH 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA4 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE : :. ::: ::.::::.: : :::: :. :::::::::::::: :::::::: :::::: gi|813 QTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGV 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA4 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP ::: :::::..:::.:::::::.::::::::::::::.:::: :..::::::::.::. gi|813 LKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPV 600 610 620 630 640 650 670 680 690 700 710 mKIAA4 PSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSS-SGTSCEPKMV .:: .:::::.:..:. :::::::::::::. ::: : ::::: . .:::::::.: gi|813 VAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKIV 660 670 680 690 700 710 720 730 740 750 760 770 mKIAA4 INTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLL ::::::::::::.:::::::::::::.::.:::::::: ::::::::: ::::::::::. gi|813 INTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALLI 720 730 740 750 760 770 780 790 800 810 820 830 mKIAA4 GKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDS ::: ::::: : :::.:::::::::::::::.:::::::::::::::::::::::::::: gi|813 GKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDREDS 780 790 800 810 820 830 840 850 860 mKIAA4 QRIDELSARDKPFDVKCELKFADSDADGD ::::.:::::::::::::::::::::::: gi|813 QRIDDLSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|168270916|dbj|BAG10251.1| semaphorin-4D precursor [ (862 aa) initn: 4052 init1: 4052 opt: 5022 Z-score: 5579.1 bits: 1043.4 E(): 0 Smith-Waterman score: 5022; 85.383% identity (94.316% similar) in 862 aa overlap (8-868:1-862) 10 20 30 40 50 60 mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL ::::.:.:::..::.:.. ::.::::.::.:::: :: :::::.: :.::::: gi|168 MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSAL 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR :.::::::::.::::::::::::::::::::::::::::::.:::::::::::::::::: gi|168 LLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYIR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL ::::::.:::::::::::::.::::::::::::::.:::::::::::::::::::: ::: gi|168 VLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGEL 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF ::::::::::::::::::::::::::::::::::::::::::::.::::.:.::::.::: gi|168 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYF 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL :::::::::::::...:::.:::::::::::::::::::::::::::::.::::::::.: gi|168 FFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNVL 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT .::::::.:::: :::::.::::::::::::::.:.:.:.: :::.::::::.::::::: gi|168 RDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSHT 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA4 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL :::::::::: :::::::::::::::::::::::::::::::::::::::::::::::.: gi|168 KWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPRL 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA4 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPV ::::::::::::::::::::: :::::.::::::::::. : . ::.:::::::.: ::: gi|168 IKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPV 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA4 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH ::::::::: .:::::::::::::::::: :::.:::::::::::::::: .::.:: gi|168 QTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALH 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA4 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE : :. ::: ::.::::.: : :::: :. :::::::::::::: :::::::: :::::: gi|168 QTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGV 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA4 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP ::: :::::..:::.:::::::.::::::::::::::.:::: :..::::::::.::. gi|168 LKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPV 600 610 620 630 640 650 670 680 690 700 710 mKIAA4 PSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSS-SGTSCEPKMV .:: .:::::.:..:. :::::::::::::. ::: : ::::: . .:::::::.: gi|168 VAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKIV 660 670 680 690 700 710 720 730 740 750 760 770 mKIAA4 INTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLL ::::::::::::.:::::::::::::.::.:::::::: ::::::::: ::::::::::. gi|168 INTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALLI 720 730 740 750 760 770 780 790 800 810 820 830 mKIAA4 GKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDS ::: ::::: : :::.:::::::::::::::.:::::::::::::::::::::::::::: gi|168 GKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDREDS 780 790 800 810 820 830 840 850 860 mKIAA4 QRIDELSARDKPFDVKCELKFADSDADGD ::::.:::::::::::::::::::::::: gi|168 QRIDDLSARDKPFDVKCELKFADSDADGD 840 850 860 >>gi|68533115|dbj|BAE06112.1| SEMA4D variant protein [Ho (870 aa) initn: 4052 init1: 4052 opt: 5022 Z-score: 5579.0 bits: 1043.4 E(): 0 Smith-Waterman score: 5022; 85.383% identity (94.316% similar) in 862 aa overlap (8-868:9-870) 10 20 30 40 50 mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSA ::::.:.:::..::.:.. ::.::::.::.:::: :: :::::.: :.:::: gi|685 SPWGRLYLMRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSA 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA4 LLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYI ::.::::::::.::::::::::::::::::::::::::::::.::::::::::::::::: gi|685 LLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYI 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA4 RVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGE :::::::.:::::::::::::.::::::::::::::.:::::::::::::::::::: :: gi|685 RVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGE 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA4 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVY :::::::::::::::::::::::::::::::::::::::::::::.::::.:.::::.:: gi|685 LYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVY 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA4 FFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNI ::::::::::::::...:::.:::::::::::::::::::::::::::::.::::::::. gi|685 FFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNV 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA4 LQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSH :.::::::.:::: :::::.::::::::::::::.:.:.:.: :::.::::::.:::::: gi|685 LRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCTYNLSTAEEVFSHGKYMQSTTVEQSH 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA4 TKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPK ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::. gi|685 TKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPR 370 380 390 400 410 420 420 430 440 450 460 470 mKIAA4 LIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEP :::::::::::::::::::::: :::::.::::::::::. : . ::.:::::::.: :: gi|685 LIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEP 430 440 450 460 470 480 480 490 500 510 520 530 mKIAA4 VLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTL : ::::::::: .:::::::::::::::::: :::.:::::::::::::::: .::.: gi|685 VQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL 490 500 510 520 530 540 540 550 560 570 580 590 mKIAA4 HQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNG :: :. ::: ::.::::.: : :::: :. :::::::::::::: :::::::: :::::: gi|685 HQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNG 550 560 570 580 590 600 600 610 620 630 640 650 mKIAA4 ELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRT ::: :::::..:::.:::::::.::::::::::::::.:::: :..::::::::.::. gi|685 VLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP 610 620 630 640 650 660 660 670 680 690 700 710 mKIAA4 PPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSS-SGTSCEPKM .:: .:::::.:..:. :::::::::::::. ::: : ::::: . .:::::::. gi|685 VVAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKI 670 680 690 700 710 720 720 730 740 750 760 770 mKIAA4 VINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALL :::::::::::::.:::::::::::::.::.:::::::: ::::::::: :::::::::: gi|685 VINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALL 730 740 750 760 770 780 780 790 800 810 820 830 mKIAA4 LGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDRED .::: ::::: : :::.:::::::::::::::.::::::::::::::::::::::::::: gi|685 IGKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDRED 790 800 810 820 830 840 840 850 860 mKIAA4 SQRIDELSARDKPFDVKCELKFADSDADGD :::::.:::::::::::::::::::::::: gi|685 SQRIDDLSARDKPFDVKCELKFADSDADGD 850 860 870 >>gi|32493365|gb|AAH54500.1| Sema domain, immunoglobulin (862 aa) initn: 4048 init1: 4048 opt: 5018 Z-score: 5574.6 bits: 1042.6 E(): 0 Smith-Waterman score: 5018; 85.383% identity (94.200% similar) in 862 aa overlap (8-868:1-862) 10 20 30 40 50 60 mKIAA4 RPRWPLPMRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSAL ::::.:.:::..::.:.. ::.::::.::.:::: :: :::::.: :.::::: gi|324 MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHEPDIYNYSAL 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 LMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR :.::::::::.::::::::::::::::::::::::::::::.:::::::::::::::::: gi|324 LLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKSKQTECLNYIR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 VLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGEL ::::::.:::::::::::::.::::::::::::::.:::::::::::::::::::: ::: gi|324 VLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGEL 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYF ::::::::::::::::::::::::::::::::::::::::::::.::::.:.::::.::: gi|324 YSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYF 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 FFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNIL :::::::::::::...:::.:::::::::::::::::::::::::::::.::::::::.: gi|324 FFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNVL 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 QDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHT .::::::.:::: :::::.::::::::::::::::.:.:.: :::.::::::.::::::: gi|324 RDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYMQSTTVEQSHT 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA4 KWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKL :::::::::: :::::::::::::::::::::::::::::::::::::::::::::::.: gi|324 KWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPRL 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA4 IKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPV ::::::::::::::::::::: :::::.::::::::::. : . ::.:::::::.: ::: gi|324 IKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPV 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA4 LTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLH ::::::::: .:::::::::::::::::: :::.:::::::::::::::: .::.:: gi|324 QTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALH 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA4 QEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGE : :. ::: ::.::::.: : :::: :. :::::::::::::: :::::::: ::::: gi|324 QTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNDV 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA4 LKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTP ::: :::::..:::.:::::::.::::::::::::::.:::: :..::::::::.::. gi|324 LKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPV 600 610 620 630 640 650 670 680 690 700 710 mKIAA4 PSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSS-SGTSCEPKMV .:: .:::::.:..:. :::::::::::::. ::: : ::::: . .:::::::.: gi|324 VAPTLSVVQTEGSRIATKVLVASTQGSSPPTPAVQATSSGAITLPPKPAPTGTSCEPKIV 660 670 680 690 700 710 720 730 740 750 760 770 mKIAA4 INTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLL ::::::::::::.:::::::::::::.::.:::::::: ::::::::: ::::::::::. gi|324 INTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCYKGYLPRQCLKFRSALLI 720 730 740 750 760 770 780 790 800 810 820 830 mKIAA4 GKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDS ::: ::::: : :::.:::::::::::::::.:::::::::::::::::::::::::::: gi|324 GKKKPKSDFCDREQSLKETLVEPGSFSQQNGEHPKPALDTGYETEQDTITSKVPTDREDS 780 790 800 810 820 830 840 850 860 mKIAA4 QRIDELSARDKPFDVKCELKFADSDADGD ::::.:::::::::::::::::::::::: gi|324 QRIDDLSARDKPFDVKCELKFADSDADGD 840 850 860 868 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Wed Mar 18 04:49:55 2009 done: Wed Mar 18 04:58:27 2009 Total Scan time: 1120.960 Total Display time: 0.430 Function used was FASTA [version 34.26.5 April 26, 2007]