FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00095.ptfa, 200 aa
 vs ./tmplib.26680 library

1768817 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.7050+/-0.00408; mu= 17.9420+/- 0.274
 mean_var=74.2485+/-16.752, 0's: 0 Z-trim: 6  B-trim: 8 in 1/35
 Lambda= 0.1488

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0962  ( 820 res)   mbg07840                   ( 820)  230   58 9.6e-10
mKIAA0678  ( 966 res)   mbh00428                   ( 966)  131   37  0.0026


>>mKIAA0962  ( 820 res)   mbg07840                        (820 aa)
 initn: 186 init1: 140 opt: 230  Z-score: 267.3  bits: 58.4 E(): 9.6e-10
Smith-Waterman score: 230;  48.052% identity (48.684% ungapped) in 77 aa overlap (9-85:69-144)

                                     10        20        30        
mFLJ00                       PNMADQRQRSLSTSGESLYHVLGLDKNATSDDIKKSYR
                                     .:::.   . :.:::....:.. ::::.:.
mKIAA0 CPFPLWEGREMELKRLGVSWRFLMVLVLILQSLSALDFDPYRVLGVSRTASQADIKKAYK
       40        50        60        70        80        90        

       40        50        60        70        80        90        
mFLJ00 KLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVN
       ::: ..::::: : : : :.: .:..:. ::..  ::. ::.::. :             
mKIAA0 KLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGDAGENQGYQKQQREHR
      100       110        120       130       140       150       

      100       110       120       130       140       150        
mFLJ00 TYFVLSSWWAKALFVVCGLLTCCYCCCCLCCCFNCCCGKCKPKAPEGEETEFYVSPEDLE
                                                                   
mKIAA0 FRHFHENFYFDESFFHFPFNAERRDSGDEKYLLHFSHYVNEVLPESFKRPYLIKITSDWC
       160       170       180       190       200       210       

>>mKIAA0678  ( 966 res)   mbh00428                        (966 aa)
 initn: 150 init1:  75 opt: 131  Z-score: 151.7  bits: 37.2 E(): 0.0026
Smith-Waterman score: 131;  43.077% identity (48.276% ungapped) in 65 aa overlap (14-74:21-82)

                      10        20        30           40        50
mFLJ00        PNMADQRQRSLSTSGESLYHVLGLDKNATSDD---IKKSYRKLALKYHPDKNP
                           : .. :.::.:  .    :   :.:.: .:: ::::::::
mKIAA0 LLKDSLDAWKKEVEKKPPMMSIDDAYEVLNLPIGQGLHDESKIRKAYFRLAQKYHPDKNP
               10        20        30        40        50        60

               60         70        80        90       100         
mFLJ00 DNPEAADKFKEINNAHAIL-TDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK
          :. : :...:.:. .: : .::                                   
mKIAA0 ---EGRDMFEKVNKAYEFLCTKSTKIVDGPDPENIILILKTQSILFNRHKEELQPYKYAG
                  70        80        90       100       110       




200 residues in 1 query   sequences
1768817 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:06:50 2006 done: Mon Mar 27 10:06:51 2006
 Scan time:  0.400 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]