FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1978.ptfa, 487 aa vs ./tmplib.26680 library 1768530 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.0189+/-0.00657; mu= -0.4589+/- 0.430 mean_var=415.2573+/-100.846, 0's: 0 Z-trim: 9 B-trim: 0 in 0/36 Lambda= 0.0629 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1870 ( 857 res) mtj02754 ( 857) 270 39 0.0023 >>mKIAA1870 ( 857 res) mtj02754 (857 aa) initn: 105 init1: 52 opt: 270 Z-score: 152.8 bits: 38.5 E(): 0.0023 Smith-Waterman score: 289; 27.572% identity (33.416% ungapped) in 486 aa overlap (28-474:159-598) 10 20 30 40 50 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDSHLRVSFCAPGPPGRSMLAALIAAQATA ::: .. .. ::::.. : . mKIAA1 GSQGPQGPVGPPGEMGPKGPPGAVGEPGLPGDSGMKGDLGPLGPPGEQGLIG-------- 130 140 150 160 170 180 60 70 80 90 100 110 mKIAA1 LNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPLLHG--GASGKQGLLG-----APPAMPL .:: ::.: . .::.. .: : : .:..:: : .::.. mKIAA1 -QRG-----EPGLEGDHGPVGPDGLKGDRGDPGPDGEHGEKGQEGLKGEDGSPGPPGITG 190 200 210 220 230 120 130 140 150 160 mKIAA1 LSG----PALSTALLQLALQSQSQNQSQGQKPGILGD-SPLGTLQAGAQPSNSLLGELSA . : :. . : . .. . .:. . :: :. .: :: : . : . :: .: mKIAA1 VPGREGKPGKQGEKGQRGAKGAKGHQGYLGEMGIPGEPGPPGT--PGPKGSRGTLGPTGA 240 250 260 270 280 290 170 180 190 200 210 mKIAA1 GGGLAPELPP-------RRGKPQPLLPPLLGPSG--GDREPMGL--GPPATQLTPPP--A : .. . : ..: :: :: ::.: ::. : :::. :: . mKIAA1 PGRMGAQGEPGLAGYNGHKGITGPLGPP--GPKGEKGDQGEDGKTEGPPG----PPGDRG 300 310 320 330 340 220 230 240 250 260 270 mKIAA1 PVGLRGSNHRGLPKDSGPLPTPPGVS-LLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKET ::: ::. :: : : : : ::. : ::: .. . : .: : . . : . mKIAA1 PVGDRGD--RGEPGDPG-YPGQEGVQGLRGEPGQQGQ-PGHPG-------PRGRPGPKGS 350 360 370 380 390 280 290 300 310 320 mKIAA1 RGWGGSGRGRRPAEPPLPSPAVPGGGSGSNN-----GNKAFQMKSRLLSPIASNRLPPE- .: : .:. :. : :.: :... : .. .. . .:. .: . mKIAA1 KGEEGP-KGK-------PGKAGPSGRRGTQGLQGLPGPRGVVGRQGPEGTAGSDGIPGRD 400 410 420 430 440 330 340 350 360 370 380 mKIAA1 --PGLPDSYGFDY-PTDVGPRRLFSHPREPTL-GAHGPSRHK-MSPPPSSFNEPRSGGGS :: . : : : ::: ..: : ::.:: : : :.... : . : mKIAA1 GRPGYQGDQGNDGDPGPVGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTE 450 460 470 480 490 500 390 400 410 420 430 mKIAA1 GGPLSHFYSGSPTSYFTSGLQAGLKQSHLNKAVG-SSPMGSSEGLLGLGPGPNGHSHLL- :: .: : : : .. . . : ..: :. :. :. :: : :. mKIAA1 GGTGLPGNQGEPGSKGQPGDSGEMGFPGVAGLFGPKGPPGDI-GFKGI-QGPRGPPGLMG 510 520 530 540 550 560 440 450 460 470 480 mKIAA1 KTPLGGQKRSFSHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF : . : . : :: :.:.:. .. . :: : mKIAA1 KEGIIGPP---GMLGPSGLPGPKGDRGSRGDLGLQGPRGPPGPRGRPGPPGPPWHPIQFQ 570 580 590 600 610 620 mKIAA1 QDDLGAAFQTWMDAQGAVRSEGYSYPDQLALDQGGEIFKTLHYLSNLIQSIKTPLGTKEN 630 640 650 660 670 680 487 residues in 1 query sequences 1768530 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:56:57 2006 done: Mon Mar 27 10:56:58 2006 Scan time: 0.740 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]