# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj57255.fasta.nr -Q ../query/mKIAA1978.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1978, 487 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7903717 sequences Expectation_n fit: rho(ln(x))= 6.8830+/-0.000204; mu= 4.6895+/- 0.011 mean_var=133.5098+/-25.706, 0's: 28 Z-trim: 68 B-trim: 337 in 2/64 Lambda= 0.110999 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|85701216|sp|Q9CW46.2|RAVR1_MOUSE RecName: Full= ( 748) 3344 546.8 7.4e-153 gi|12836469|dbj|BAB23670.1| unnamed protein produc ( 756) 3344 546.8 7.5e-153 gi|149020523|gb|EDL78328.1| RAVER1 homolog (human) ( 568) 3213 525.7 1.2e-146 gi|81910350|sp|Q5XI28.1|RAVR1_RAT RecName: Full=Ri ( 748) 3213 525.8 1.5e-146 gi|73986949|ref|XP_533918.2| PREDICTED: similar to (1861) 2930 480.8 1.3e-132 gi|109123419|ref|XP_001105380.1| PREDICTED: simila ( 720) 2901 475.8 1.6e-131 gi|22902182|gb|AAH37565.1| RAVER1 protein [Homo sa ( 561) 2879 472.2 1.5e-130 gi|123173757|ref|NP_597709.2| RAVER1 [Homo sapiens ( 756) 2870 470.9 5.3e-130 gi|119604500|gb|EAW84094.1| hCG2033729, isoform CR ( 884) 2870 470.9 5.9e-130 gi|133777512|gb|AAI23486.1| RAVER1 protein [Bos ta ( 716) 1663 277.6 7.7e-72 gi|194213180|ref|XP_001492770.2| PREDICTED: ribonu ( 715) 1656 276.4 1.7e-71 gi|27881639|gb|AAH43698.1| Raver1 protein [Mus mus ( 230) 1621 270.4 3.4e-70 gi|74759693|sp|Q8IY67.1|RAVR1_HUMAN RecName: Full= ( 606) 1295 218.6 3.7e-54 gi|149423740|ref|XP_001517220.1| PREDICTED: simila ( 632) 800 139.3 2.8e-30 gi|47682299|gb|AAH70699.1| MGC83237 protein [Xenop ( 694) 688 121.4 7.6e-25 gi|183986231|gb|AAI66376.1| LOC100158642 protein [ ( 701) 683 120.6 1.3e-24 gi|119626954|gb|EAX06549.1| hypothetical protein F ( 678) 419 78.3 6.9e-12 gi|85702750|sp|Q7TPD6.1|RAVR2_MOUSE RecName: Full= ( 673) 414 77.5 1.2e-11 gi|109008378|ref|XP_001090029.1| PREDICTED: simila ( 832) 415 77.8 1.3e-11 gi|119626955|gb|EAX06550.1| hypothetical protein F ( 460) 401 75.3 3.8e-11 gi|40850921|gb|AAH65303.1| RAVER2 protein [Homo sa ( 514) 398 74.9 5.7e-11 gi|67466983|sp|Q9HCJ3.2|RAVR2_HUMAN RecName: Full= ( 691) 398 75.0 7.2e-11 gi|114108222|gb|AAI22908.1| Ribonucleoprotein, PTB ( 640) 397 74.8 7.6e-11 gi|224058381|ref|XP_002195250.1| PREDICTED: simila ( 731) 397 74.8 8.4e-11 gi|109475182|ref|XP_342872.3| PREDICTED: similar t ( 673) 396 74.6 8.8e-11 gi|194665729|ref|XP_600332.4| PREDICTED: similar t ( 890) 397 74.9 9.8e-11 gi|114557192|ref|XP_524729.2| PREDICTED: ribonucle ( 943) 397 74.9 1e-10 gi|123254035|emb|CAM21386.1| ribonucleoprotein, PT ( 459) 387 73.1 1.8e-10 gi|148698928|gb|EDL30875.1| ribonucleoprotein, PTB ( 503) 387 73.1 1.9e-10 gi|189520226|ref|XP_001338083.2| PREDICTED: simila ( 838) 388 73.4 2.5e-10 gi|47220043|emb|CAG12191.1| unnamed protein produc ( 856) 381 72.3 5.6e-10 gi|134025375|gb|AAI35283.1| LOC100037917 protein [ ( 598) 349 67.1 1.5e-08 gi|194387696|dbj|BAG61261.1| unnamed protein produ ( 230) 324 62.7 1.1e-07 gi|52138901|gb|AAH82620.1| LOC494652 protein [Xeno ( 597) 327 63.6 1.7e-07 gi|194141983|gb|EDW58391.1| GJ14320 [Drosophila vi ( 692) 326 63.4 2.1e-07 gi|7023005|dbj|BAA91798.1| unnamed protein product ( 166) 306 59.8 6.6e-07 gi|190615789|gb|EDV31313.1| GF15295 [Drosophila an (1223) 313 61.6 1.4e-06 gi|47222165|emb|CAG11591.1| unnamed protein produc ( 374) 300 59.1 2.4e-06 gi|190649580|gb|EDV46858.1| GG19316 [Drosophila er ( 906) 304 60.0 3e-06 gi|194188677|gb|EDX02261.1| GE15779 [Drosophila ya ( 920) 303 59.9 3.4e-06 gi|386433|gb|AAB27289.1| PRB1L precursor protein [ ( 358) 293 57.9 5e-06 gi|114643600|ref|XP_001151718.1| PREDICTED: hypoth ( 594) 295 58.4 5.9e-06 gi|149044564|gb|EDL97823.1| similar to hypothetica ( 603) 294 58.3 6.7e-06 gi|194201555|gb|EDX15131.1| GD16392 [Drosophila si ( 635) 294 58.3 7e-06 gi|1911490|gb|AAB50686.1| Con1 [Homo sapiens] ( 382) 290 57.5 7.4e-06 gi|160409933|sp|P02812.3|PRB2_HUMAN RecName: Full= ( 416) 290 57.5 7.9e-06 gi|119616641|gb|EAW96235.1| hCG2043380 [Homo sapie ( 416) 289 57.3 8.8e-06 gi|148698929|gb|EDL30876.1| ribonucleoprotein, PTB ( 554) 289 57.4 1.1e-05 gi|52001469|sp|P04280.2|PRP1_HUMAN RecName: Full=B ( 392) 284 56.5 1.5e-05 gi|94734336|emb|CAK05034.1| novel protein similar ( 731) 286 57.1 1.9e-05 >>gi|85701216|sp|Q9CW46.2|RAVR1_MOUSE RecName: Full=Ribo (748 aa) initn: 2484 init1: 2484 opt: 3344 Z-score: 2900.6 bits: 546.8 E(): 7.4e-153 Smith-Waterman score: 3344; 99.795% identity (99.795% similar) in 488 aa overlap (1-487:261-748) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::::::::::::::::: gi|857 GFSDVDALRRALSVVYTPTFCQLACGQDGQLKGFAVLEYETAEMAEAAQERADGQALGDS 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|857 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL 300 310 320 330 340 350 100 110 120 130 140 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQK-PGILGDSPLGTL ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|857 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQKKPGILGDSPLGTL 360 370 380 390 400 410 150 160 170 180 190 200 mKIAA1 QAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|857 QAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTP 420 430 440 450 460 470 210 220 230 240 250 260 mKIAA1 PPAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|857 PPAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGK 480 490 500 510 520 530 270 280 290 300 310 320 mKIAA1 ETRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|857 ETRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLP 540 550 560 570 580 590 330 340 350 360 370 380 mKIAA1 DSYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|857 DSYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYS 600 610 620 630 640 650 390 400 410 420 430 440 mKIAA1 GSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|857 GSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSF 660 670 680 690 700 710 450 460 470 480 mKIAA1 SHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF :::::::::::::::::::::::::::::::::::::: gi|857 SHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 720 730 740 >>gi|12836469|dbj|BAB23670.1| unnamed protein product [M (756 aa) initn: 2484 init1: 2484 opt: 3344 Z-score: 2900.5 bits: 546.8 E(): 7.5e-153 Smith-Waterman score: 3344; 99.795% identity (99.795% similar) in 488 aa overlap (1-487:269-756) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::::::::::::::::: gi|128 GFSDVDALRRALSVVYTPTFCQLACGQDGQLKGFAVLEYETAEMAEAAQERADGQALGDS 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL 300 310 320 330 340 350 100 110 120 130 140 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQK-PGILGDSPLGTL ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|128 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQKKPGILGDSPLGTL 360 370 380 390 400 410 150 160 170 180 190 200 mKIAA1 QAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 QAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTP 420 430 440 450 460 470 210 220 230 240 250 260 mKIAA1 PPAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 PPAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGK 480 490 500 510 520 530 270 280 290 300 310 320 mKIAA1 ETRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 ETRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLP 540 550 560 570 580 590 330 340 350 360 370 380 mKIAA1 DSYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 DSYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYS 600 610 620 630 640 650 390 400 410 420 430 440 mKIAA1 GSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 GSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSF 660 670 680 690 700 710 450 460 470 480 mKIAA1 SHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF :::::::::::::::::::::::::::::::::::::: gi|128 SHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 720 730 740 750 >>gi|149020523|gb|EDL78328.1| RAVER1 homolog (human), is (568 aa) initn: 2396 init1: 2396 opt: 3213 Z-score: 2788.9 bits: 525.7 E(): 1.2e-146 Smith-Waterman score: 3213; 95.697% identity (98.566% similar) in 488 aa overlap (1-487:81-568) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::::::.:::: ::: : gi|149 GFNDVDALRQALSAVYTPTFCQLASGQDGQLKGFAVLEYETAEMAEAAQQRADGLALGGS 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|149 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPL 120 130 140 150 160 170 100 110 120 130 140 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQK-PGILGDSPLGTL ::::::::::::::::::::::::::::::::::::::.:.:::.:: :::::::::::: gi|149 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQNQSQSQSQKKPGILGDSPLGTL 180 190 200 210 220 230 150 160 170 180 190 200 mKIAA1 QAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|149 QAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPASQLTP 240 250 260 270 280 290 210 220 230 240 250 260 mKIAA1 PPAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGK ::::.:::::. :::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PPAPMGLRGSSLRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGK 300 310 320 330 340 350 270 280 290 300 310 320 mKIAA1 ETRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLP ::::::::::::::::::::::::::::..::::.::: :: :::::::::::::::::: gi|149 ETRGWGGSGRGRRPAEPPLPSPAVPGGGNASNNGSKAFPMKPRLLSPIASNRLPPEPGLP 360 370 380 390 400 410 330 340 350 360 370 380 mKIAA1 DSYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYS :::.:::::::::::::::::: .::::::::::::::::::.::::::::::::::::: gi|149 DSYSFDYPTDVGPRRLFSHPRESNLGAHGPSRHKMSPPPSSFSEPRSGGGSGGPLSHFYS 420 430 440 450 460 470 390 400 410 420 430 440 mKIAA1 GSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSF 480 490 500 510 520 530 450 460 470 480 mKIAA1 SHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF :::::::::::::::::::::::::::::::::::::: gi|149 SHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 540 550 560 >>gi|81910350|sp|Q5XI28.1|RAVR1_RAT RecName: Full=Ribonu (748 aa) initn: 2396 init1: 2396 opt: 3213 Z-score: 2787.2 bits: 525.8 E(): 1.5e-146 Smith-Waterman score: 3213; 95.697% identity (98.566% similar) in 488 aa overlap (1-487:261-748) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::::::.:::: ::: : gi|819 GFNDVDALRQALSAVYTPTFCQLASGQDGQLKGFAVLEYETAEMAEAAQQRADGLALGGS 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|819 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPL 300 310 320 330 340 350 100 110 120 130 140 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQK-PGILGDSPLGTL ::::::::::::::::::::::::::::::::::::::.:.:::.:: :::::::::::: gi|819 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQNQSQSQSQKKPGILGDSPLGTL 360 370 380 390 400 410 150 160 170 180 190 200 mKIAA1 QAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|819 QAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPASQLTP 420 430 440 450 460 470 210 220 230 240 250 260 mKIAA1 PPAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGK ::::.:::::. :::::::::::::::::::::::::::::::::::::::::::::::: gi|819 PPAPMGLRGSSLRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGK 480 490 500 510 520 530 270 280 290 300 310 320 mKIAA1 ETRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLP ::::::::::::::::::::::::::::..::::.::: :: :::::::::::::::::: gi|819 ETRGWGGSGRGRRPAEPPLPSPAVPGGGNASNNGSKAFPMKPRLLSPIASNRLPPEPGLP 540 550 560 570 580 590 330 340 350 360 370 380 mKIAA1 DSYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYS :::.:::::::::::::::::: .::::::::::::::::::.::::::::::::::::: gi|819 DSYSFDYPTDVGPRRLFSHPRESNLGAHGPSRHKMSPPPSSFSEPRSGGGSGGPLSHFYS 600 610 620 630 640 650 390 400 410 420 430 440 mKIAA1 GSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 GSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSF 660 670 680 690 700 710 450 460 470 480 mKIAA1 SHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF :::::::::::::::::::::::::::::::::::::: gi|819 SHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 720 730 740 >>gi|73986949|ref|XP_533918.2| PREDICTED: similar to Non (1861 aa) initn: 2251 init1: 1449 opt: 2930 Z-score: 2536.9 bits: 480.8 E(): 1.3e-132 Smith-Waterman score: 2930; 87.269% identity (95.483% similar) in 487 aa overlap (1-487:1381-1861) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::: ::.:::: ::: : gi|739 GFSDVDALRRALSAVHTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGS 1360 1370 1380 1390 1400 1410 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|739 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPL 1420 1430 1440 1450 1460 1470 100 110 120 130 140 150 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQKPGILGDSPLGTLQ :::.:.:::::::::::::::.::::::::::::::.::: .:::::::::::::: gi|739 LHGNAGGKQGLLGAPPAMPLLNGPALSTALLQLALQTQSQ-----KKPGILGDSPLGTLQ 1480 1490 1500 1510 1520 160 170 180 190 200 210 mKIAA1 AGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTPP ::::.: :::::::::.: :::::::::: ::::::::::::::: .::::::.::::: gi|739 PGAQPANPLLGELSAGGALPPELPPRRGKPPPLLPPLLGPSGGDREAIGLGPPAAQLTPP 1530 1540 1550 1560 1570 1580 220 230 240 250 260 270 mKIAA1 PAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKE ::::::::.. :.: :::::::.: :::::::::::.:::::::::::::::.::::::: gi|739 PAPVGLRGTGLRSLQKDSGPLPAPSGVSLLGEPPKDFRIPLNPYLNLHSLLPASNLAGKE 1590 1600 1610 1620 1630 1640 280 290 300 310 320 330 mKIAA1 TRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLPD .:::::.::.::::: ::.: .::.:.:.....::::.:::::::.::.:::::::::: gi|739 ARGWGGTGRSRRPAESHLPNPPAPGAGGGGGGSSKAFQLKSRLLSPLASTRLPPEPGLPD 1650 1660 1670 1680 1690 1700 340 350 360 370 380 390 mKIAA1 SYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYSG :::::::.::::::::::::::.:: : :::::::::::.:.: :::::.:::::::::: gi|739 SYGFDYPSDVGPRRLFSHPREPALGPHRPSRHKMSPPPSGFGE-RSGGGGGGPLSHFYSG 1710 1720 1730 1740 1750 1760 400 410 420 430 440 450 mKIAA1 SPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSFS :::::::::::::::::::::::::::.::.::::::::::::::::::::::::::::. gi|739 SPTSYFTSGLQAGLKQSHLNKAVGSSPLGSGEGLLGLGPGPNGHSHLLKTPLGGQKRSFA 1770 1780 1790 1800 1810 1820 460 470 480 mKIAA1 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF ::::::::::::::::::::::::::::::::::::: gi|739 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 1830 1840 1850 1860 >>gi|109123419|ref|XP_001105380.1| PREDICTED: similar to (720 aa) initn: 1984 init1: 1197 opt: 2901 Z-score: 2517.4 bits: 475.8 E(): 1.6e-131 Smith-Waterman score: 2901; 86.448% identity (94.251% similar) in 487 aa overlap (1-487:242-720) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::: ::..::: ::: : gi|109 GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLALGGS 220 230 240 250 260 270 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|109 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPL 280 290 300 310 320 330 100 110 120 130 140 150 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQKPGILGDSPLGTLQ :::.:.::::::::::::::::::::::::::::::.:.: .:::::::::::.:: gi|109 LHGSAGGKQGLLGAPPAMPLLSGPALSTALLQLALQTQGQ-----KKPGILGDSPLGALQ 340 350 360 370 380 160 170 180 190 200 210 mKIAA1 AGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTPP ::::.: ::::: ::::: :::::::::: :::: .:::.::::: .::::::.::::: gi|109 PGAQPANPLLGELPAGGGLPPELPPRRGKPPPLLPSVLGPAGGDREALGLGPPAAQLTPP 390 400 410 420 430 440 220 230 240 250 260 270 mKIAA1 PAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKE :::::::::. ::: :::::::::::::::::::::::::::::::::::::.::::::: gi|109 PAPVGLRGSGLRGLQKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPASNLAGKE 450 460 470 480 490 500 280 290 300 310 320 330 mKIAA1 TRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLPD .:.:::.::.::::: : :.: .:::::.:. ::::.:::::::..: :::::::: : gi|109 ARAWGGAGRSRRPAEGPPPNPPAPGGGSSSS---KAFQLKSRLLSPLSSARLPPEPGLSD 510 520 530 540 550 560 340 350 360 370 380 390 mKIAA1 SYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYSG :::::::.::::::::::::::.:: :::::::::::::.:.: :::..:::::::::: gi|109 SYGFDYPSDVGPRRLFSHPREPALGPHGPSRHKMSPPPSGFGERSSGGSGGGPLSHFYSG 570 580 590 600 610 620 400 410 420 430 440 450 mKIAA1 SPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSFS :::::::::::::::::::.::.::::.::.::::::::::::::::::::::::::::. gi|109 SPTSYFTSGLQAGLKQSHLSKAIGSSPLGSGEGLLGLGPGPNGHSHLLKTPLGGQKRSFA 630 640 650 660 670 680 460 470 480 mKIAA1 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF ::::::::::::::::::::::::::::::::::::: gi|109 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 690 700 710 720 >>gi|22902182|gb|AAH37565.1| RAVER1 protein [Homo sapien (561 aa) initn: 1950 init1: 1171 opt: 2879 Z-score: 2499.9 bits: 472.2 E(): 1.5e-130 Smith-Waterman score: 2879; 85.626% identity (94.251% similar) in 487 aa overlap (1-487:83-561) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::: ::..::: .:: : gi|229 GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGS 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|229 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPL 120 130 140 150 160 170 100 110 120 130 140 150 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQKPGILGDSPLGTLQ :::.:.:::::::::::::::.::::::::::::::.:.: .:::::::::::.:: gi|229 LHGSAGGKQGLLGAPPAMPLLNGPALSTALLQLALQTQGQ-----KKPGILGDSPLGALQ 180 190 200 210 220 160 170 180 190 200 210 mKIAA1 AGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTPP ::::.: ::::: ::::: :::::::::: :::: .:::.::::: .::::::.::::: gi|229 PGAQPANPLLGELPAGGGLPPELPPRRGKPPPLLPSVLGPAGGDREALGLGPPAAQLTPP 230 240 250 260 270 280 220 230 240 250 260 270 mKIAA1 PAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKE :::::::::. ::: :::::::::::::::::::::::::::::::::::::.::::::: gi|229 PAPVGLRGSGLRGLQKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPASNLAGKE 290 300 310 320 330 340 280 290 300 310 320 330 mKIAA1 TRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLPD .:::::.::.::::: :: .: .:::::.:. ::::.:::::::..: :::::::: : gi|229 ARGWGGAGRSRRPAEGPLTNPPAPGGGSSSS---KAFQLKSRLLSPLSSARLPPEPGLSD 350 360 370 380 390 400 340 350 360 370 380 390 mKIAA1 SYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYSG ::.::::.:.::::::::::::.:: :::::::::::::.:.: :::..:::::::::: gi|229 SYSFDYPSDMGPRRLFSHPREPALGPHGPSRHKMSPPPSGFGERSSGGSGGGPLSHFYSG 410 420 430 440 450 460 400 410 420 430 440 450 mKIAA1 SPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSFS :::::::::::::::::::.::.::::.::.::::::.:::::::::::::::::::::. gi|229 SPTSYFTSGLQAGLKQSHLSKAIGSSPLGSGEGLLGLSPGPNGHSHLLKTPLGGQKRSFA 470 480 490 500 510 520 460 470 480 mKIAA1 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF ::::::::::::::::::::::::::::::::::::: gi|229 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 530 540 550 560 >>gi|123173757|ref|NP_597709.2| RAVER1 [Homo sapiens] (756 aa) initn: 1957 init1: 1178 opt: 2870 Z-score: 2490.3 bits: 470.9 E(): 5.3e-130 Smith-Waterman score: 2870; 85.421% identity (94.045% similar) in 487 aa overlap (1-487:278-756) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::: ::..::: .:: : gi|123 GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGS 250 260 270 280 290 300 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|123 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPL 310 320 330 340 350 360 100 110 120 130 140 150 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQKPGILGDSPLGTLQ :::.:.:::::::::::::::.::::::::::::::.:.: .:::::::::::.:: gi|123 LHGSAGGKQGLLGAPPAMPLLNGPALSTALLQLALQTQGQ-----KKPGILGDSPLGALQ 370 380 390 400 410 420 160 170 180 190 200 210 mKIAA1 AGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTPP ::::.: ::::: ::::: :::::::::: :::: .:::.::::: .::::::.::::: gi|123 PGAQPANPLLGELPAGGGLPPELPPRRGKPPPLLPSVLGPAGGDREALGLGPPAAQLTPP 430 440 450 460 470 480 220 230 240 250 260 270 mKIAA1 PAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKE :::::::::. ::: :::::::::::::::::::::::::::::::::::::.::::::: gi|123 PAPVGLRGSGLRGLQKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPASNLAGKE 490 500 510 520 530 540 280 290 300 310 320 330 mKIAA1 TRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLPD .:::::.::.::::: : .: .:::::.:. ::::.:::::::..: :::::::: : gi|123 ARGWGGAGRSRRPAEGPPTNPPAPGGGSSSS---KAFQLKSRLLSPLSSARLPPEPGLSD 550 560 570 580 590 340 350 360 370 380 390 mKIAA1 SYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYSG ::.::::.:.::::::::::::.:: :::::::::::::.:.: :::..:::::::::: gi|123 SYSFDYPSDMGPRRLFSHPREPALGPHGPSRHKMSPPPSGFGERSSGGSGGGPLSHFYSG 600 610 620 630 640 650 400 410 420 430 440 450 mKIAA1 SPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSFS :::::::::::::::::::.::.::::.::.::::::.:::::::::::::::::::::. gi|123 SPTSYFTSGLQAGLKQSHLSKAIGSSPLGSGEGLLGLSPGPNGHSHLLKTPLGGQKRSFA 660 670 680 690 700 710 460 470 480 mKIAA1 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF ::::::::::::::::::::::::::::::::::::: gi|123 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 720 730 740 750 >>gi|119604500|gb|EAW84094.1| hCG2033729, isoform CRA_c (884 aa) initn: 1957 init1: 1178 opt: 2870 Z-score: 2489.4 bits: 470.9 E(): 5.9e-130 Smith-Waterman score: 2870; 85.421% identity (94.045% similar) in 487 aa overlap (1-487:406-884) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::: ::..::: .:: : gi|119 GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGS 380 390 400 410 420 430 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|119 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPL 440 450 460 470 480 490 100 110 120 130 140 150 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQKPGILGDSPLGTLQ :::.:.:::::::::::::::.::::::::::::::.:.: .:::::::::::.:: gi|119 LHGSAGGKQGLLGAPPAMPLLNGPALSTALLQLALQTQGQ-----KKPGILGDSPLGALQ 500 510 520 530 540 550 160 170 180 190 200 210 mKIAA1 AGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTPP ::::.: ::::: ::::: :::::::::: :::: .:::.::::: .::::::.::::: gi|119 PGAQPANPLLGELPAGGGLPPELPPRRGKPPPLLPSVLGPAGGDREALGLGPPAAQLTPP 560 570 580 590 600 610 220 230 240 250 260 270 mKIAA1 PAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKE :::::::::. ::: :::::::::::::::::::::::::::::::::::::.::::::: gi|119 PAPVGLRGSGLRGLQKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPASNLAGKE 620 630 640 650 660 670 280 290 300 310 320 330 mKIAA1 TRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLPD .:::::.::.::::: : .: .:::::.:. ::::.:::::::..: :::::::: : gi|119 ARGWGGAGRSRRPAEGPPTNPPAPGGGSSSS---KAFQLKSRLLSPLSSARLPPEPGLSD 680 690 700 710 720 340 350 360 370 380 390 mKIAA1 SYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYSG ::.::::.:.::::::::::::.:: :::::::::::::.:.: :::..:::::::::: gi|119 SYSFDYPSDMGPRRLFSHPREPALGPHGPSRHKMSPPPSGFGERSSGGSGGGPLSHFYSG 730 740 750 760 770 780 400 410 420 430 440 450 mKIAA1 SPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSFS :::::::::::::::::::.::.::::.::.::::::.:::::::::::::::::::::. gi|119 SPTSYFTSGLQAGLKQSHLSKAIGSSPLGSGEGLLGLSPGPNGHSHLLKTPLGGQKRSFA 790 800 810 820 830 840 460 470 480 mKIAA1 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF ::::::::::::::::::::::::::::::::::::: gi|119 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 850 860 870 880 >>gi|133777512|gb|AAI23486.1| RAVER1 protein [Bos taurus (716 aa) initn: 1573 init1: 866 opt: 1663 Z-score: 1446.0 bits: 277.6 E(): 7.7e-72 Smith-Waterman score: 2736; 83.162% identity (90.760% similar) in 487 aa overlap (1-487:261-716) 10 20 30 mKIAA1 LKGFAVLEYETAEMAEAAQERADGQALGDS :::::::::::::::: ::.:::: ::: : gi|133 GFSDVDALRRALSAVHTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGS 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPL :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|133 HLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPL 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA1 LHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQSQNQSQGQKPGILGDSPLGTLQ :::::.:::::::::::.:::.::::::::::::::.::: .:::::::::::::: gi|133 LHGGAGGKQGLLGAPPAVPLLNGPALSTALLQLALQTQSQ-----KKPGILGDSPLGTLQ 360 370 380 390 400 160 170 180 190 200 210 mKIAA1 AGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTPP ::::.: ::::::::::: :::::::::: ::::::::::::::::::::::: ::::: gi|133 PGAQPANPLLGELSAGGGLPPELPPRRGKPPPLLPPLLGPSGGDREPMGLGPPAPQLTPP 410 420 430 440 450 460 220 230 240 250 260 270 mKIAA1 PAPVGLRGSNHRGLPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKE ::::::::.. ::: :::::::::::::::::::::.:::::::::::::::.::::. gi|133 PAPVGLRGAGLRGLQKDSGPLPTPPGVSLLGEPPKDFRIPLNPYLNLHSLLPASNLAA-- 470 480 490 500 510 520 280 290 300 310 320 330 mKIAA1 TRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNKAFQMKSRLLSPIASNRLPPEPGLPD ::::.:.....::::.:::::::..: :::::::::: gi|133 -----------------------PGGGGGGGGSSKAFQLKSRLLSPLSSARLPPEPGLPD 530 540 550 560 340 350 360 370 380 390 mKIAA1 SYGFDYPTDVGPRRLFSHPREPTLGAHGPSRHKMSPPPSSFNEPRSGGGSGGPLSHFYSG ::::.::.::::::::::::::::: ::::::.:::::..:.: :. ::.::::::.:.: gi|133 SYGFEYPSDVGPRRLFSHPREPTLGPHGPSRHRMSPPPGGFGE-RGVGGGGGPLSHLYAG 570 580 590 600 610 400 410 420 430 440 450 mKIAA1 SPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLGGQKRSFS :::: :::::::::.::::::.:::::.::.::::::::::::::::::::::::::::. gi|133 SPTSCFTSGLQAGLRQSHLNKVVGSSPLGSGEGLLGLGPGPNGHSHLLKTPLGGQKRSFA 620 630 640 650 660 670 460 470 480 mKIAA1 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF ::::::::::::::::::::::::::::::::::::: gi|133 HLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 680 690 700 710 487 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 15:22:17 2009 done: Mon Mar 16 15:29:30 2009 Total Scan time: 968.550 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]