FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4042.ptfa, 261 aa
 vs ./tmplib.26680 library

1768756 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.5879+/-0.0079; mu= -9.2706+/- 0.523
 mean_var=357.2854+/-86.752, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0679

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0280  ( 166 res)   mbg02827                   ( 166)  718   83 1.3e-17


>>mKIAA0280  ( 166 res)   mbg02827                        (166 aa)
 initn: 796 init1: 504 opt: 718  Z-score: 408.8  bits: 82.6 E(): 1.3e-17
Smith-Waterman score: 718;  66.883% identity (68.212% ungapped) in 154 aa overlap (108-261:16-166)

        80        90       100       110       120       130       
mKIAA4 GVPYANAKGIGYPAGFPVGYAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVP
                                     : ... .:.  :: ::::::  . .. : :
mKIAA0                RHLPPPVDTGTENRTYQASSAAFR--YTAGTPYKVPPTQSNTAPP
                              10        20          30        40   

       140       150       160       170       180       190       
mKIAA4 PYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATV
       ::: ::::::::.::.:::::::. ::: :.:::::.::: :::::::::::::..:...
mKIAA0 PYSPSPNPYQTAMYPIRSAYPQQNLYAQ-GAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
            50        60        70         80        90       100  

       200       210       220       230       240       250       
mKIAA4 YPAPIPPPRGSGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYV
       ::::.  :: .::.::::::::::::::::::. . : .. :::..::::: :::.::::
mKIAA0 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
            110       120       130       140       150       160  

       260 
mKIAA4 PPQW
       ::.:
mKIAA0 PPHW
           




261 residues in 1 query   sequences
1768756 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:00:03 2006 done: Mon Mar 27 11:00:03 2006
 Scan time:  0.500 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]