FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1144.ptfa, 512 aa vs ./tmplib.26680 library 1768505 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4038+/-0.00404; mu= 15.9560+/- 0.271 mean_var=69.0207+/-15.818, 0's: 0 Z-trim: 6 B-trim: 30 in 1/35 Lambda= 0.1544 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1044 ( 636 res) mbg01522 ( 636) 552 132 1.1e-31 mKIAA4250 ( 239 res) mpj00429 ( 239) 128 37 0.0015 mKIAA4255 ( 1460 res) mbg05755 (1460) 133 39 0.0025 >>mKIAA1044 ( 636 res) mbg01522 (636 aa) initn: 654 init1: 225 opt: 552 Z-score: 661.0 bits: 132.2 E(): 1.1e-31 Smith-Waterman score: 747; 29.572% identity (32.759% ungapped) in 514 aa overlap (9-510:3-478) 10 20 30 40 50 mKIAA1 CLPAGRGSFPPASAAGSRA--PRCSAPARRGRLGISSMTRQSLWDVSDTDVEDGEIRINV .: ::: : : : : : . ..: . ..:. : .:: mKIAA1 PPLPDNMAAGVAAWLPFARAAAI-GWMPVASGPMPAPPRQERKRTQDALIVLNV 10 20 30 40 50 60 70 80 90 100 110 mKIAA1 GGFKRRLRSHTLLRFPETRLGRLLLCHSREAILELCDDYDDVQREFYFDRNPELFPYVLH .: . . . :: :.:.: :: :. . : ....:::.:..: ..:. mKIAA1 SGTRFQTWQDTLERYPDTLLGS----SERDFF------YHPETQQYFFDRDPDIFRHILN 60 70 80 90 100 120 130 140 150 160 170 mKIAA1 FYHTGKLHVMAELCVFSFSQEIEYWGINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQES ::.::::: . :. ....:. ..:. .: .:: :. :. : . :. ....: .. mKIAA1 FYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRE-NAERLQDDADTDN 110 120 130 140 150 160 180 190 200 210 220 230 mKIAA1 TTSSFDEILAFYNDASKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSVLSILVVLGSIIT : : . : . :...: :..:: :... :: .. . . :.:. mKIAA1 TGES---------------ALPTMTARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIA 170 180 190 200 240 250 260 270 280 290 mKIAA1 MCLNSLPDFQIPDSQGNPGEDP---RFEI----VEHFGIAWFTFELVARFAVAPDFLKFF ....: .: :. : : :. . .. . :: : . :.:.::. .: mKIAA1 NVVETVP---CGSSPGHIKELPCGERYAVAFFCLDTACVMIFTVEYLLRLAAAPSRYRFV 210 220 230 240 250 260 300 310 320 330 340 350 mKIAA1 KNALNLIDLMSIVPFYITLVVNLVVESSPTLANLGRVAQVLRLMRIFRILKLARHSTGLR ......::...:.:.:: ::.. . : ....: :..:.:::.:..::: ::: mKIAA1 RSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTL-------RVFRVFRIFKFSRHSQGLR 270 280 290 300 310 360 370 380 390 400 410 mKIAA1 SLGATLKYSYKEVGLLLLYLSVGISIFSVVAYTIEKEENEG-LATIPACWWWATVSMTTV :: ::: .:.:.::. :...: ::..: . :: . . ...::: .:.. :.:::. mKIAA1 ILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSASKFTSIPAAFWYTIVTMTTL 320 330 340 350 360 370 420 430 440 450 460 mKIAA1 GYGDVVPGTTAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLES--AMRSCDFG ::::.:: : :::. .: : :.:.::..::. .: ..::..:..... .. :... .. mKIAA1 GYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQKKARLA 380 390 400 410 420 430 470 480 490 500 510 mKIAA1 DGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPSELSLDDSLH .. . : . :. : ..:... . :.. :. .: . : mKIAA1 R-IRAAKSGSANAYMQSKRNGLLSNQLQSSEDEPAFISKSGSSFETQHHHLLHCLEKTTN 440 450 460 470 480 490 mKIAA1 HEFVDEQVFEESCMEVATVNRPSSHRPSLSSQQGVTSTCCSRRHKKTFRIPNANVSGSHR 500 510 520 530 540 550 >>mKIAA4250 ( 239 res) mpj00429 (239 aa) initn: 112 init1: 63 opt: 128 Z-score: 155.8 bits: 37.3 E(): 0.0015 Smith-Waterman score: 128; 31.522% identity (33.721% ungapped) in 92 aa overlap (54-145:51-136) 30 40 50 60 70 80 mKIAA1 APARRGRLGISSMTRQSLWDVSDTDVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL .:.:::: .:: : :.. : :: mKIAA4 LGAGLGGGLCRRCSAGMGALAQRPGGVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRL-- 30 40 50 60 70 90 100 110 120 130 140 mKIAA1 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW :.. .: .: :.. . .::.: : ::.. . ::: . .: . .: :.. mKIAA4 CQADP---DLDSDKDETG-AYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFY 80 90 100 110 120 130 150 160 170 180 190 200 mKIAA1 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN .:. mKIAA4 NITSLIKLVKDKIRERDSRISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGS 140 150 160 170 180 190 >>mKIAA4255 ( 1460 res) mbg05755 (1460 aa) initn: 178 init1: 99 opt: 133 Z-score: 152.3 bits: 39.3 E(): 0.0025 Smith-Waterman score: 178; 25.854% identity (29.121% ungapped) in 205 aa overlap (221-414:722-914) 200 210 220 230 240 250 mKIAA1 NDASKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSVLSILVVLGSIITMCLNSLPDFQIP :. .... ... ..::: :. .. : mKIAA4 RLERRRRKAQRRPYYADYSHTRRSIHSLCTSHYLDLFITFIICLNVITM---SMEHYNQP 700 710 720 730 740 260 270 280 290 300 310 mKIAA1 DSQGNPGEDPRFEIVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITL : : .. .. :.:: . .. :: : .:::. : .:: .:: . : mKIAA4 KSL-----DEALKYCNYVFTIVFVFEAALKL-VAFGFRRFFKDRWNQLDL-AIVLLSIMG 750 760 770 780 790 800 320 330 340 350 360 mKIAA1 VVNLVVESSPTLANLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVG----- .. .: . .: . ...:..:: :.::: . .::.:.: :. . .:: mKIAA4 IALEEIEMNAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLL 810 820 830 840 850 860 370 380 390 400 410 mKIAA1 ---LLLLYLSVGISIFSVVAYTIEKEENEGL---ATIPACWWWATVSMTTVGYGDVVPGT :...: ..:. .:. . . : . ::: ::. . : ... :. :: mKIAA4 FMLLFFIYAALGVELFGRLECS-EDNPCEGLSRHATFTN-FGMAFLTLFRVSTGDNWNGI 870 880 890 900 910 420 430 440 450 460 470 mKIAA1 TAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSVNL mKIAA4 MKDTLRECTREDKHCLSYLPALSPVYFVTFVLVAQFVLVNVVVAVLMKHLEESNKEARED 920 930 940 950 960 970 512 residues in 1 query sequences 1768505 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:37:11 2006 done: Mon Mar 27 10:37:11 2006 Scan time: 0.720 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]