FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0089.ptfa, 363 aa
 vs ./tmplib.26680 library

1768654 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.8218+/-0.00363; mu= 17.4180+/- 0.244
 mean_var=64.5917+/-14.638, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1596

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4010  ( 352 res)   mbj00682                   ( 352) 1756  413 1.4e-116


>>mKIAA4010  ( 352 res)   mbj00682                        (352 aa)
 initn: 1756 init1: 1756 opt: 1756  Z-score: 2185.4  bits: 412.9 E(): 1.4e-116
Smith-Waterman score: 1756;  73.623% identity (73.623% ungapped) in 345 aa overlap (19-363:8-352)

               10        20        30        40        50        60
mKIAA0 EEGCVQQRSGLAMAAAPLKVCIVGSGNWGSAVAKIIGSNVKTLQKFSSTVKMWVFEETVN
                         :::::::::::::.:::.:::.  : .:.  : :::::: ..
mKIAA4            SSTMAGKKVCIVGSGNWGSAIAKIVGSNAGRLAHFDPRVTMWVFEEDIG
                          10        20        30        40         

               70        80        90       100       110       120
mKIAA0 GRKLTDIINNDHENVKYLPGHKLPENVVAVPNLSEAVQDADLLVFVIPHQFIHKICDEIT
       :::::.:::..::::::::::::: ::::.:.. .:.  ::.::::.::::: ::::.. 
mKIAA4 GRKLTEIINTQHENVKYLPGHKLPPNVVAIPDVVQAATGADILVFVVPHQFIGKICDQLK
      50        60        70        80        90       100         

              130       140       150       160       170       180
mKIAA0 GRVPEKALGITLIKGIDEGPDGLKLISDIIREKMGIDISVLMGANIASEVAAEKFCETTI
       :..  ...::.::::.::::.::::::..: :..:: .::::::::::::: ::::::::
mKIAA4 GHLKANTIGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVAEEKFCETTI
     110       120       130       140       150       160         

              190       200       210       220       230       240
mKIAA0 GSKVMQNGLLFKELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAA
       : :   .: :.:.:.::::::::::...::::.::::::::::::::::::  :::::::
mKIAA4 GCKDPAQGQLLKDLMQTPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAA
     170       180       190       200       210       220         

              250       260       270       280       290       300
mKIAA0 VIRLGLMEMIAFAKIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEE
       ::::::::::::::.::.: ::.::::::::::::::::::::::.::::::::::.::.
mKIAA4 VIRLGLMEMIAFAKLFCSGIVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQ
     230       240       250       260       270       280         

              310       320       330       340       350       360
mKIAA0 LEKELLNGQKLQGPQTSAEVYRILRQKGLLDKFPLFTAVYQICYEGRPVTQMLSCLQSHP
       ::::.:::::::::::. :.. ::..:::.::::::::::..::::.:: ... :::.::
mKIAA4 LEKEMLNGQKLQGPQTARELHSILQHKGLVDKFPLFTAVYKVCYEGQPVGEFIRCLQNHP
     290       300       310       320       330       340         

          
mKIAA0 EHI
       ::.
mKIAA4 EHM
     350  




363 residues in 1 query   sequences
1768654 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:59 2006 done: Mon Mar 27 10:12:00 2006
 Scan time:  0.570 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]