FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1963.ptfa, 349 aa
 vs ./tmplib.26680 library

1768668 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.5083+/-0.00487; mu= 17.1509+/- 0.328
 mean_var=107.9981+/-24.479, 0's: 0 Z-trim: 1  B-trim: 2 in 1/35
 Lambda= 0.1234

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4235  ( 394 res)   mfj03248                   ( 394)  973  183   2e-47


>>mKIAA4235  ( 394 res)   mfj03248                        (394 aa)
 initn: 1010 init1: 365 opt: 973  Z-score: 943.8  bits: 183.3 E(): 2e-47
Smith-Waterman score: 984;  49.401% identity (54.455% ungapped) in 334 aa overlap (35-349:73-394)

           10        20        30        40        50        60    
mKIAA1 VPYPEPSPCRGWCPRRWGARTMKSALCSRFFILLPWILIVIIMLDVDPRRPAPQLTSRPY
                                     .:.::: :.. .           : .  : 
mKIAA4 CQLASAMGNEELWVQPALEMPKRRDILAIVLIVLPWTLLITVW---------HQSSLAPL
             50        60        70        80                 90   

           70        80        90       100                   110  
mKIAA1 FSPHAVGCGGSRVPLRRSSPGRDAAEKRNESRPQLQ---------PEP---RLPTIYAIT
       .. :    :..  : ... :: :  :    .:  ..         : :    ::::...:
mKIAA4 LAVHK-DEGSD--PRHEAPPGADPREYCMSDRDIVEVVRTEYVHTPPPWSDTLPTIHVVT
            100         110       120       130       140       150

            120       130       140       150       160       170  
mKIAA1 PTYSRPVQKAELTRLANTFRQVAQLHWILVEDRATRSELVSSFLARAGLPNTHLHVPTPR
       ::::::::::::::.:::. .: .:::..:::   :. :.. .:  .::  ::::: :::
mKIAA4 PTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPR
              160       170       180       190       200       210

                  180       190       200       210       220      
mKIAA1 RYK------RPWLPRATEQRNAGLAWLRQRHQHQSAQPGVLFFADDDNTYSLELFQEMRT
        ::       : .::.: ::: .: :::.   ..:.::::..:::::::::::::.:::.
mKIAA4 NYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDDNTYSLELFEEMRS
              220       230       240       250       260       270

        230       240       250        260       270       280     
mKIAA1 TRKVSVWPVGLVGGRRYERPLVKN-GKVVGWYTGWREDRPFAIDMAGFAVSLQVILSNPK
       ::.::::::..::: ::: : :.. :::::: : .   ::::::::::::.:..::.  .
mKIAA4 TRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQ
              280       290       300       310       320       330

         290       300       310       320       330       340     
mKIAA1 AVFKRRGSQPGMQESDFLKQITTVEELEPKASNCTKVLVWHTRTEKVNLANEPKYHLDTV
       : :: :: . :.:::..:....:...:::::.::::.:::::::::  :.:: :  .   
mKIAA4 AYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDP
              340       350       360       370       380       390

           
mKIAA1 NIEV
       ..:.
mKIAA4 SVEI
           




349 residues in 1 query   sequences
1768668 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:56:37 2006 done: Mon Mar 27 10:56:38 2006
 Scan time:  0.550 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]