FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0725.ptfa, 583 aa
 vs ./tmplib.26680 library

1768434 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.7989+/-0.00407; mu= 16.5430+/- 0.272
 mean_var=92.1003+/-20.850, 0's: 0 Z-trim: 2  B-trim: 2 in 1/35
 Lambda= 0.1336

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1705  ( 562 res)   mbh00641                   ( 562)  139   37  0.0055


>>mKIAA1705  ( 562 res)   mbh00641                        (562 aa)
 initn: 306 init1:  84 opt: 139  Z-score: 145.9  bits: 36.9 E(): 0.0055
Smith-Waterman score: 228;  25.284% identity (30.796% ungapped) in 352 aa overlap (226-523:91-433)

         200       210       220       230       240       250     
mKIAA0 DEWGSTSTEQGRPRSVKRGVENIPVDIHCGEPLQIDHLVFVVHGIGPACDLRFRSIVQCV
                                     .: : .:.::::::::   :     :.. .
mKIAA1 TVTQKLGFSKASSSGTRLHRGYVEEATLEDKPSQTSHIVFVVHGIGQKMDQG--RIIKNT
               70        80        90       100       110          

         260       270       280       290       300               
mKIAA0 NDFRSVSLNLLQTHFKKAQENEQIGRVEFLPVNWHSPLHSTGVDMD-------RG-----
         .: .. .. . ::     ...  .::::::.:.: :   :  .:       ::     
mKIAA1 AMMREAARKMEEKHF-----SNHATHVEFLPVEWRSKLTLDGDTVDSITPDKVRGLRDML
      120       130            140       150       160       170   

                      310         320       330                    
mKIAA0 DASTLE-----------EDLKKLQ--LSEFVTVFEKEKVDRE-----------ALALCTD
       ..:...           : .: ::  :... ..: ... : :           .:.    
mKIAA1 NSSAMDIMYYTSPLYRDELVKGLQQELNRLYSLFCSRNPDFEEKGGKVSIVSHSLGCVIT
           180       190       200       210       220       230   

     340       350       360       370        380           390    
mKIAA0 RDLQEMGIPLGPRKKILNHFSARKNSVSINRPAMSA-SEVNISK----ENGDYLDVGIGQ
        :..    : :  ...:..     .   ..       .:. :.:    :  : :  :.  
mKIAA1 YDIMMGWNPGGLYEQLLQKEEELPDERWMSYEERHLLDELYITKRRLREIEDRLH-GLKA
           240       250       260       270       280        290  

           400       410       420          430         440        
mKIAA0 VSV-KYPRLNYKPEIFFAFGSPIGMFLTVRGLR---RIDPNYKFPT--CKGFFNIYHPEL
        :. . : :..: : :: .:::...::..::.:     . .. .:   :. ..::.::  
mKIAA1 PSISQTPALKFKVENFFCMGSPLAVFLALRGIRPGNSGSQDHILPREICNRLLNIFHPTD
            300       310       320       330       340       350  

      450       460        470       480       490       500       
mKIAA0 REGLTRMSMDLKN-NLLGSLRMAWKSFTRGPYPALQASETAEETEAEPESSSEKSNEANT
         .     . ::. . .. ... : . : .: :  . . .  .   :: : :.. : :  
mKIAA1 PVAYRLEPLILKHYSNISPVQIHWYN-TSNPLPYEHMKPNFLNPAKEPTSVSDSENIAAI
            360       370        380       390       400       410 

       510             520       530       540       550       560 
mKIAA0 EEP---PVEVKE---EAPINVGMLNGGQRIDYVLQEKPIESFNEYLFALQSHLCYWESED
         :   ::  ..   :.  :.:                                      
mKIAA1 PSPVTSPVLSRRHYGESITNIGKASILGAASIGKGLGGMLFSRFGRSSASQPSEPSKDSL
             420       430       440       450       460       470 




583 residues in 1 query   sequences
1768434 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:27:17 2006 done: Mon Mar 27 10:27:17 2006
 Scan time:  0.740 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]