FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4166.ptfa, 712 aa
 vs ./tmplib.26680 library

1768305 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.9073+/-0.00622; mu= 9.4076+/- 0.416
 mean_var=196.0437+/-46.328, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0916

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0974  ( 369 res)   mpj02408                   ( 369)  212   40 0.00045


>>mKIAA0974  ( 369 res)   mpj02408                        (369 aa)
 initn: 443 init1: 199 opt: 212  Z-score: 165.5  bits: 40.2 E(): 0.00045
Smith-Waterman score: 338;  27.854% identity (36.637% ungapped) in 438 aa overlap (208-628:17-366)

       180       190       200       210       220       230       
mKIAA4 AHNSWPGSSTQSSTTGLSTERSSVSSWRDDEFDKVSAQKVHQLFWEVEELLFEGKVSPQT
                                     :.:. ...::. .:  ..:::.: ..: .:
mKIAA0               HFLYQQQPWKRYKFSQELDQNATEKVQAMFTAIDELLYEQQLSAHT
                             10        20        30        40      

       240       250       260       270         280       290     
mKIAA4 QNLLAECSEWARRSLHLRVVGRQLVPPTDEGFQHFQGSLPS--SATHEALPHVPDHTSSS
       :.:  ::..::    :::..:::.. :. ::.  .  : ::  ::.:::        :. 
mKIAA0 QGLQKECQQWAASFPHLRILGRQIITPS-EGYGLYPRS-PSAVSASHEAT------LSQE
         50        60        70         80         90              

         300       310       320       330       340       350     
mKIAA4 RELCISGSQIVPEVHSASALTDPDGTESADLTSCSSLKEEVYHVDGNIEEYFAFDRKQDG
       ::                                 :  :: .:  ::  :  :  .::  
mKIAA0 RE---------------------------------STMEEGFH--GNKSE--AATEKQ--
      100                                          110             

         360       370       380       390       400       410     
mKIAA4 DEHLGQSPALRGRKRHRHGLPPISPDDCIRDAVAAEVFDHVWTNVVEILEDLIRKTWESA
                       . : :::.:  :... : :.:::.::...:  .:.: :. ::. 
mKIAA0 ----------------KLGYPPIAPFHCMKEDVLAHVFDNVWSKAVGCMEQLTRSHWEGC
                     120       130       140       150       160   

         420       430       440       450       460       470     
mKIAA4 LTGGKKHKEKLKVAENRSPHVLMSRLSTDVCSVPPSRSSDTLQPSLAPHFNPPQFPQLHR
        .  ... :  .. .. ::.::  .    .  :: :.      ::..   .: .: :   
mKIAA0 ASDDESNVEITRL-DSGSPYVLNEQHPLVLPRVPQSKV-----PSITS--SPMSFCQ---
           170        180       190       200              210     

         480       490       500       510       520           530 
mKIAA4 FSSNFYSDLSGVMTIQAKPLQQRPTYSADRTQNDQDDKLPGGGVGASSRHRL----GRI-
        .:.   ..::.. :.. ::: :     :.      : : . .  . .:. :    : . 
mKIAA0 -ASGHQPNVSGLL-IHGMPLQPRNLSLMDKLLPVTADTLSSPSPMTLGRNNLLPPIGTVE
             220        230       240       250       260       270

                 540       550             560       570       580 
mKIAA4 ---LDARGPQTSVKKTPVHRRLPSIASD-----PQ-RLKTPTVYSDEILRGTKLQTGIDY
          :.: :::  .:.     :  : . :     :: ::  : :.:    : .  :.   .
mKIAA0 VEHLSAMGPQRPTKSHGDSSRARSAVVDEPNQQPQERLLLP-VFS----RPNTTQS---F
              280       290       300       310            320     

             590       600       610        620       630       640
mKIAA4 LPSPAAVQTSRSRLPPIGSETGEPNTAASGSRPV-SVRPYRGRHPQSRVFSAMPDSIERS
       ::.    ..  :. :    . ..:. ...: .   :..:     : ::.           
mKIAA0 LPDTQYRSSCASEYP----HQARPGRGSAGPQSHGSTKPQSRGGPISRTRQ         
            330           340       350       360                  

              650       660       670       680       690       700
mKIAA4 PLRERTIVLEQLSRPSTTHTFRSDTPRKGSLTPVEFVAHTWTGQSILTGSQYLPKSYQRA




712 residues in 1 query   sequences
1768305 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:03:53 2006 done: Mon Mar 27 11:03:54 2006
 Scan time:  0.850 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]