FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1620.ptfa, 1418 aa vs ./tmplib.26680 library 1767599 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.8788+/-0.00675; mu= -7.8728+/- 0.444 mean_var=268.4767+/-67.857, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.0783 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1471 ( 801 res) mtj02395 ( 801) 237 41 0.001 >>mKIAA1471 ( 801 res) mtj02395 (801 aa) initn: 92 init1: 56 opt: 237 Z-score: 159.1 bits: 41.1 E(): 0.001 Smith-Waterman score: 259; 24.440% identity (28.169% ungapped) in 491 aa overlap (207-655:57-524) 180 190 200 210 220 230 mKIAA1 DLAPVDVEFSFPKFSRLRRGLKAEAVKGPVPAAPARRRLQL-PRLRVREVAEEAQVARMA :. : :: : : : .::. ..: : mKIAA1 GTIHLSCPRGRSPAAPGQVGVVFRLHCRLSPGQPDLWRLALLPCLSLRELKKKAPPPR-- 30 40 50 60 70 80 240 250 260 270 280 mKIAA1 AAAPPPRKAKAEAEAATGAGFTA------PQIELVGPRLPSAEVG--VPQVSVPKGTPST .:: : .. : :. :: : : .::::::. .: .: : ::. mKIAA1 PTAPKPLLSRREEGEAVEAGDTPEELRSLPPDMMVGPRLPDPFLGTTAPLHFSPGPFPSS 90 100 110 120 130 140 290 300 310 320 330 340 mKIAA1 EAASGFALHLPTLGLGAPAAPAVEPPATGIQVPQVELPTLPSLPTLPTLPCLDTQEGAAV .: : : :..: :.. : .. :.. .: :. :. : .. : . mKIAA1 ---TGPATHY----LSGPLPPGTYSGPTQLMQPRAAVPMAPATVLYPA-PAYTSELGLVP 150 160 170 180 190 350 360 370 380 390 400 mKIAA1 VKVPTLD-VAAPSMGVDLALPGAEVEAQGEVPEVALKMPRLSFP-RFGIRGKEATEAKVV . : :..: :: : : . .: :. :.:.. : . ....: . mKIAA1 RSSPQHGIVSSPYAGVG---PPQPVVGLPSAPPPQLSGPELAMTVRPATTTVDSVQAPIS 200 210 220 230 240 250 410 420 430 440 450 mKIAA1 KGSPEAKAKGPRLRMPTFGL------SLLEPRPSGPEAVAESKLKLPTLKMP-SFGIG-- . . : : .: : . :. .:.: . : : : : ...:: mKIAA1 SHTAPRPNPTPALPQPCFPVPQPVPQSVPQPQPLPVPYTYSIGTKQP-LPAPYTYSIGTK 260 270 280 290 300 310 460 470 480 490 500 510 mKIAA1 --VAG--PEVKAPKGPEVKLPKVPEVKLPKVPEAAIPDVQLPEVQLPKMSDMKLPKIPEM ..: :. . : : . .: ::.. :.. :. : :. : :. . . :. . mKIAA1 QHLTGPLPQHQFPPGIPTGFP-VPRTG-PQAQAQPQPQPQ-PQPQ-PQPQPQPQPQPQSQ 320 330 340 350 360 520 530 540 550 560 mKIAA1 VVPDVRLPEVQLPKVPEM--KVPEMKLP-KVPEMAVPDVHLPDVQLPKVPEMKLPKVPEM :. . :. : :. : . . .. :: . :.. :. . : . :: : .:. mKIAA1 SQPQPQ-PQPQ-PQRPAFGPQPTQQPLPFQHPHL-FPS-QAPGI-LPPPPPTPYHFTPQP 370 380 390 400 410 420 570 580 590 600 610 mKIAA1 AV-----PDVHL-----P--DVQLPKVPEMKLPEMKLPKV-PEMAVPDVRLPEVQLPKVS .: : .: : : :. . .: :. : .: . :. :... mKIAA1 GVLGQPPPTLHTQLYPGPSQDPLPPHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQAT 430 440 450 460 470 480 620 630 640 650 660 670 mKIAA1 EVKL--PKMPEMAVPDVHLPELQLPKMSEVKLPKMPEMAVPDVRLPEVQLPKVSEMKLPK :.. : . .:. :: :. . .:. : : : mKIAA1 PVSIRGPPPASQPTPSPHLVPSPAPSPGPGPVPSRPPTAEPPPCLRRGAAAADLLSSSPE 490 500 510 520 530 540 680 690 700 710 720 730 mKIAA1 MPEMTMPDIRLPEVQLPKVPDIKLPEMKLPEIKLPKVPDMAVPDVPLPELQLPKVSDIRL mKIAA1 SQHGGTQPPGGGQPLLQPTKVDAAEGRRPQALRLIEQDPYEHPERLQQLQQELEAFRGQL 550 560 570 580 590 600 1418 residues in 1 query sequences 1767599 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:49:41 2006 done: Mon Mar 27 10:49:43 2006 Scan time: 1.210 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]