FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1872.ptfa, 420 aa
 vs ./tmplib.26680 library

1768597 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.7477+/-0.00451; mu= 15.6779+/- 0.303
 mean_var=84.3124+/-19.094, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1397

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0367  ( 354 res)   mfj00046                   ( 354) 1232  258 9.8e-70


>>mKIAA0367  ( 354 res)   mfj00046                        (354 aa)
 initn: 1133 init1: 791 opt: 1232  Z-score: 1344.3  bits: 257.5 E(): 9.8e-70
Smith-Waterman score: 1232;  59.133% identity (63.455% ungapped) in 323 aa overlap (72-384:19-329)

              50        60        70        80          90         
mKIAA1 PLLFPALMGTTEATLRMENVDVRDEWQDEDLPRPLPEDTG--VERLGGAVEDSSS-----
                                     : ::  :: :  ..   :..  :..     
mKIAA0             SARTAHLSVPLASKPPVTLRRPPSEDEGMDIHFEEGVLSPSAADMRPE
                           10        20        30        40        

          100       110       120       130       140       150    
mKIAA1 PPSTLNLSGAHRKRKTLVAPEINISLDQSEGSLLSDDFLDTPDDLDINVDDIETPDETDS
       ::..:.:.:.: .:  :.::.::.::::::::.:::: ::.::..:::::...::::.::
mKIAA0 PPNSLDLNGSHPRRIKLTAPNINLSLDQSEGSILSDDNLDSPDEIDINVDELDTPDEADS
       50        60        70        80        90       100        

          160       170       180       190       200       210    
mKIAA1 LEFLGNGNELEWEDDTPVATAKNMPGDSADLFGDGSAEDGSAANGRLWRTVIIGEQEHRI
       .:. ..      ::  :  ::..  :. .. . . .::.    : ::::::.:::::.::
mKIAA0 FEYTNH------ED--P--TANKSSGQESESIPEYTAEEEREDN-RLWRTVVIGEQEQRI
      110                 120       130       140        150       

          220       230          240       250       260       270 
mKIAA1 DLHMIRPYMKVVTHGG---YYGEGLNAIIVFAACFLPDSSSPDYHYIMENLFLYVISSLE
       :...:.:: .:..:::   :::.:::::::::::::::::  ::::.::::::::::.::
mKIAA0 DMKVIEPYRRVISHGGDSGYYGDGLNAIIVFAACFLPDSSRADYHYVMENLFLYVISTLE
       160       170       180       190       200       210       

             280       290       300       310       320       330 
mKIAA1 LLVAEDYMIVYLNGATPRRRMPGIGWLKKCYHMIDRRLRKNLKSLIIVHPSWFIRTVLAI
       :.:::::::::::::::::.:::.::.::::.::::::::::::.:::::::::::.::.
mKIAA0 LMVAEDYMIVYLNGATPRRKMPGLGWMKKCYQMIDRRLRKNLKSFIIVHPSWFIRTILAV
       220       230       240       250       260       270       

             340       350       360       370       380       390 
mKIAA1 SRPFISVKFISKIQYVHSLEELERLIPMEHVQLPDCVLQYEEQRLRAKRESTRPPQPEFL
       .::::: :: :::.:: :: ::  ::::. ...:. ... .:. ::   :...       
mKIAA0 TRPFISSKFSSKIKYVTSLSELSGLIPMDCIHIPESIIKLDEE-LREASEAAKTSCLYND
       280       290       300       310       320        330      

             400       410       420
mKIAA1 LPRSEEKPETVEEEDRAAEATEDQETSMS
                                    
mKIAA0 PEMSSMEKDIDMKLKEKP           
        340       350               




420 residues in 1 query   sequences
1768597 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:54:55 2006 done: Mon Mar 27 10:54:56 2006
 Scan time:  0.650 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]