FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4118.ptfa, 248 aa
 vs ./tmplib.26680 library

1768769 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.8974+/-0.00386; mu= 12.4426+/- 0.258
 mean_var=86.3278+/-20.146, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1380

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0668  ( 739 res)   mfj01241                   ( 739)  556  120 2.7e-28
mKIAA0810  ( 920 res)   mpm11116                   ( 920)  539  117 3.3e-27


>>mKIAA0668  ( 739 res)   mfj01241                        (739 aa)
 initn: 515 init1: 339 opt: 556  Z-score: 600.2  bits: 120.1 E(): 2.7e-28
Smith-Waterman score: 556;  38.785% identity (39.336% ungapped) in 214 aa overlap (19-229:522-735)

                           10        20        30          40      
mKIAA4             PHGTHLPNYSQYHHRVHSQGQQLQQLQAELNK-LHKE-VSSVRAAHSE
                                     ::.. ..  : :.. :.:: . .:   . .
mKIAA0 GARSGLLQRDEMHAQLQELENKILTKMAEMQGKSAREAAASLGQILQKEGIVGVTEEQVH
             500       510       520       530       540       550 

         50        60        70        80        90       100      
mKIAA4 RVAKLVFQRLNEDFVRKPDYALSSVGASIDLEKTSSDYEDQNTAYFWNRLSFWNYARPPS
       :..: ..:: .:: .   :::: : :::.   . :  :: ...      . .: ... : 
mKIAA0 RIVKQALQRYSEDRIGMVDYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPR
             560       570       580       590       600       610 

        110       120       130       140       150       160      
mKIAA4 VILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTVAHTGGASSAPRDFAVY
       :::.::: :::::::.: .: .:.:: .... . .::.: : ... ..  ::::.:::..
mKIAA0 VILQPDVHPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIF
             620       630       640       650       660       670 

        170        180       190       200       210       220     
mKIAA4 GLQADDETE-VFLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQILSNWGHPRFTCLYRV
       :.. : . : ..:: : .: .   ::::..: .  ...  :...::.:::::..::.:: 
mKIAA0 GFDEDLQQEGTLLGTFAYDQDGEPIQTFYFQASKMATYQVVELRILTNWGHPEYTCIYRF
             680       690       700       710       720       730 

         230       240        
mKIAA4 RAHGVRTSEWADDNATGVTGGPH
       :.::                   
mKIAA0 RVHGEPAH               
                              

>>mKIAA0810  ( 920 res)   mpm11116                        (920 aa)
 initn: 543 init1: 320 opt: 539  Z-score: 580.8  bits: 116.8 E(): 3.3e-27
Smith-Waterman score: 539;  34.783% identity (35.242% ungapped) in 230 aa overlap (2-229:688-916)

                                            10        20        30 
mKIAA4                              PHGTHLPNYSQYHHRVHSQGQQLQQLQAELN
                                     :  .:   ..  :..   ::   . .: ..
mKIAA0 SEDQQGGSLEWLLEKLSSRFVSKDELQVLLHDLELKLLQNITHHITVTGQAPTS-EAIVS
       660       670       680       690       700       710       

               40        50        60        70        80        90
mKIAA4 KLHKE-VSSVRAAHSERVAKLVFQRLNEDFVRKPDYALSSVGASIDLEKTSSDYEDQNTA
        ...  .:..  :... ... ...  ..: .   :.:: : :.::   . :  :: ... 
mKIAA0 AVNQAGISGITEAQAHIIVNNALKLYSQDKTGMVDFALESGGGSILSTRCSETYETKTAL
        720       730       740       750       760       770      

              100       110       120       130       140       150
mKIAA4 YFWNRLSFWNYARPPSVILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTV
            . .: ... : :...::..:::::::.:..: .:.::  ..  . .:..: : :.
mKIAA0 LSLFGVPLWYFSQSPRVVIQPDIYPGNCWAFKGSQGYLVVRLSMKIYPTTFTMEHIPKTL
        780       790       800       810       820       830      

              160       170        180       190       200         
mKIAA4 AHTGGASSAPRDFAVYGLQADDETE-VFLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQ
       . ::. ::::.:::::::... . :   ::.: .: . . .: ::  . : .::  :...
mKIAA0 SPTGNISSAPKDFAVYGLETEYQEEGQPLGRFTYDQEGDSLQMFHTLERPDQAFQIVELR
        840       850       860       870       880       890      

     210       220       230       240        
mKIAA4 ILSNWGHPRFTCLYRVRAHGVRTSEWADDNATGVTGGPH
       .:::::::..::::: :.::                   
mKIAA0 VLSNWGHPEYTCLYRFRVHGEPIQ               
        900       910       920               




248 residues in 1 query   sequences
1768769 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:02:26 2006 done: Mon Mar 27 11:02:27 2006
 Scan time:  0.480 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]