FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4118.ptfa, 248 aa vs ./tmplib.26680 library 1768769 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.8974+/-0.00386; mu= 12.4426+/- 0.258 mean_var=86.3278+/-20.146, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1380 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0668 ( 739 res) mfj01241 ( 739) 556 120 2.7e-28 mKIAA0810 ( 920 res) mpm11116 ( 920) 539 117 3.3e-27 >>mKIAA0668 ( 739 res) mfj01241 (739 aa) initn: 515 init1: 339 opt: 556 Z-score: 600.2 bits: 120.1 E(): 2.7e-28 Smith-Waterman score: 556; 38.785% identity (39.336% ungapped) in 214 aa overlap (19-229:522-735) 10 20 30 40 mKIAA4 PHGTHLPNYSQYHHRVHSQGQQLQQLQAELNK-LHKE-VSSVRAAHSE ::.. .. : :.. :.:: . .: . . mKIAA0 GARSGLLQRDEMHAQLQELENKILTKMAEMQGKSAREAAASLGQILQKEGIVGVTEEQVH 500 510 520 530 540 550 50 60 70 80 90 100 mKIAA4 RVAKLVFQRLNEDFVRKPDYALSSVGASIDLEKTSSDYEDQNTAYFWNRLSFWNYARPPS :..: ..:: .:: . :::: : :::. . : :: ... . .: ... : mKIAA0 RIVKQALQRYSEDRIGMVDYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPR 560 570 580 590 600 610 110 120 130 140 150 160 mKIAA4 VILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTVAHTGGASSAPRDFAVY :::.::: :::::::.: .: .:.:: .... . .::.: : ... .. ::::.:::.. mKIAA0 VILQPDVHPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIF 620 630 640 650 660 670 170 180 190 200 210 220 mKIAA4 GLQADDETE-VFLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQILSNWGHPRFTCLYRV :.. : . : ..:: : .: . ::::..: . ... :...::.:::::..::.:: mKIAA0 GFDEDLQQEGTLLGTFAYDQDGEPIQTFYFQASKMATYQVVELRILTNWGHPEYTCIYRF 680 690 700 710 720 730 230 240 mKIAA4 RAHGVRTSEWADDNATGVTGGPH :.:: mKIAA0 RVHGEPAH >>mKIAA0810 ( 920 res) mpm11116 (920 aa) initn: 543 init1: 320 opt: 539 Z-score: 580.8 bits: 116.8 E(): 3.3e-27 Smith-Waterman score: 539; 34.783% identity (35.242% ungapped) in 230 aa overlap (2-229:688-916) 10 20 30 mKIAA4 PHGTHLPNYSQYHHRVHSQGQQLQQLQAELN : .: .. :.. :: . .: .. mKIAA0 SEDQQGGSLEWLLEKLSSRFVSKDELQVLLHDLELKLLQNITHHITVTGQAPTS-EAIVS 660 670 680 690 700 710 40 50 60 70 80 90 mKIAA4 KLHKE-VSSVRAAHSERVAKLVFQRLNEDFVRKPDYALSSVGASIDLEKTSSDYEDQNTA ... .:.. :... ... ... ..: . :.:: : :.:: . : :: ... mKIAA0 AVNQAGISGITEAQAHIIVNNALKLYSQDKTGMVDFALESGGGSILSTRCSETYETKTAL 720 730 740 750 760 770 100 110 120 130 140 150 mKIAA4 YFWNRLSFWNYARPPSVILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTV . .: ... : :...::..:::::::.:..: .:.:: .. . .:..: : :. mKIAA0 LSLFGVPLWYFSQSPRVVIQPDIYPGNCWAFKGSQGYLVVRLSMKIYPTTFTMEHIPKTL 780 790 800 810 820 830 160 170 180 190 200 mKIAA4 AHTGGASSAPRDFAVYGLQADDETE-VFLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQ . ::. ::::.:::::::... . : ::.: .: . . .: :: . : .:: :... mKIAA0 SPTGNISSAPKDFAVYGLETEYQEEGQPLGRFTYDQEGDSLQMFHTLERPDQAFQIVELR 840 850 860 870 880 890 210 220 230 240 mKIAA4 ILSNWGHPRFTCLYRVRAHGVRTSEWADDNATGVTGGPH .:::::::..::::: :.:: mKIAA0 VLSNWGHPEYTCLYRFRVHGEPIQ 900 910 920 248 residues in 1 query sequences 1768769 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:02:26 2006 done: Mon Mar 27 11:02:27 2006 Scan time: 0.480 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]