FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0168.ptfa, 331 aa
 vs ./tmplib.26680 library

1768686 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.1394+/-0.0045; mu= 11.9600+/- 0.300
 mean_var=98.6147+/-22.957, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1292

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00186  ( 293 res)   mng13225                   ( 293)  252   57 1.8e-09


>>mFLJ00186  ( 293 res)   mng13225                        (293 aa)
 initn: 128 init1:  72 opt: 252  Z-score: 262.3  bits: 56.7 E(): 1.8e-09
Smith-Waterman score: 252;  26.009% identity (27.885% ungapped) in 223 aa overlap (110-328:81-292)

      80        90       100       110       120       130         
mKIAA0 ERIRPPPSSSSWHSGCNLGAQGTTLKPLTMPTVQISEVDMPVEGLETHSPTDSRGLKPVQ
                                     ::.:  :. . ... ...      :.: ..
mFLJ00 FTAKTTFFRNLQSKQPSKNVCKAVEETQHPPTIQ--EIKQKIDSYNSREK-HCLGMK-LS
               60        70        80          90        100       

     140       150       160       170        180       190        
mKIAA0 EDTPQLMRTRSDVGVRRRGNVRTSSDQRRIRRHRFSIN-GHFYNHKTSVFTPAYGSVTNV
       ::       .  . .::  .: ..   . :      .: .   ...:: . :   .. ..
mFLJ00 EDGTYTGFIKVHLKLRRPVTVPAGIRPQSIYDAIKEVNPAATTDKRTSFYLP-LDAIKQL
        110       120       130       140       150        160     

      200       210       220       230          240       250     
mKIAA0 RINSTMTTPQVLKLLLNKFKIENSAEEFALYV-VHTSGEK--QRLKSSDYPLIARILQGP
       .:.:: :. .:.. ::.:: . .. ..:::.  .: .:.   :.:. .::::  :.: ::
mFLJ00 HISSTTTVSEVIQGLLKKFMVVDNPQKFALFKRIHKDGQVLFQKLSIADYPLYLRLLAGP
         170       180       190       200       210       220     

         260       270       280       290       300       310     
mKIAA0 CEQISKVFLMEKDQVEEVTYDVAQYIKFEMPVLKSFIQKLQEEEDREVEKLMRKYTVLRL
         .. . :....... :: .:.     : .: :..:.  :..::. ....:..::. .: 
mFLJ00 DTDVLS-FVLKENETGEVEWDA-----FSIPELQNFLTILEKEEQDKIHQLQKKYNKFRQ
         230        240            250       260       270         

         320       330 
mKIAA0 MIRQRLEEIAETPETI
        ... :.:    :   
mFLJ00 KLEEALRESQGKPG  
     280       290     




331 residues in 1 query   sequences
1768686 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:13:40 2006 done: Mon Mar 27 10:13:41 2006
 Scan time:  0.550 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]