# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj39272.fasta.nr -Q ../query/mKIAA1889.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1889, 106 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921192 sequences Expectation_n fit: rho(ln(x))= 5.2065+/-0.000183; mu= 4.5433+/- 0.010 mean_var=70.8909+/-14.066, 0's: 37 Z-trim: 37 B-trim: 2691 in 1/66 Lambda= 0.152328 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|218675727|gb|AAI69294.2| X Kell blood group pre ( 286) 715 165.4 3.9e-39 gi|149060989|gb|EDM11599.1| XK-related protein 4 [ ( 356) 715 165.4 4.7e-39 gi|77417620|sp|Q5GH67.1|XKR4_MOUSE RecName: Full=X ( 647) 715 165.6 7.5e-39 gi|77417622|sp|Q5GH59.1|XKR4_RAT RecName: Full=XK- ( 647) 715 165.6 7.5e-39 gi|119607162|gb|EAW86756.1| hCG1983291 [Homo sapie ( 281) 699 161.9 4.4e-38 gi|119906445|ref|XP_595770.3| PREDICTED: XK, Kell ( 429) 699 162.0 6.2e-38 gi|194036733|ref|XP_001928176.1| PREDICTED: simila ( 645) 700 162.3 7.4e-38 gi|126321102|ref|XP_001368594.1| PREDICTED: simila ( 658) 700 162.3 7.5e-38 gi|194214912|ref|XP_001916342.1| PREDICTED: XK, Ke ( 567) 699 162.1 7.8e-38 gi|77417621|sp|Q49LS4.1|XKR4_PANTR RecName: Full=X ( 650) 699 162.1 8.7e-38 gi|74707818|sp|Q5GH76.1|XKR4_HUMAN RecName: Full=X ( 650) 699 162.1 8.7e-38 gi|224046254|ref|XP_002196924.1| PREDICTED: XK, Ke ( 571) 689 159.9 3.6e-37 gi|52547114|gb|AAU81653.1| XK-related protein 4 [X ( 617) 686 159.2 6e-37 gi|73999390|ref|XP_851429.1| PREDICTED: similar to ( 553) 685 159.0 6.4e-37 gi|149411222|ref|XP_001514351.1| PREDICTED: simila ( 544) 668 155.2 8.4e-36 gi|46948425|gb|AAT07124.1| XK-related protein 4 [D ( 612) 546 128.5 1.1e-27 gi|82582340|sp|Q49LS9.1|XKR4_TETNG RecName: Full=X ( 498) 535 126.0 5e-27 gi|47215599|emb|CAG11630.1| unnamed protein produc ( 511) 535 126.0 5.1e-27 gi|46948407|gb|AAT07115.1| XK-related protein 4 [T ( 497) 520 122.7 4.9e-26 gi|118100775|ref|XP_001235083.1| PREDICTED: simila ( 471) 379 91.7 9.9e-17 gi|49116994|gb|AAH73727.1| MGC84542 protein [Xenop ( 361) 362 87.9 1.1e-15 gi|79158579|gb|AAI07955.1| Zgc:123037 [Danio rerio ( 404) 354 86.1 4e-15 gi|46948433|gb|AAT07128.1| XK-related protein 7b [ ( 404) 354 86.1 4e-15 gi|148674064|gb|EDL06011.1| X Kell blood group pre ( 527) 334 81.8 1e-13 gi|77417625|sp|Q5GH64.1|XKR7_MOUSE RecName: Full=X ( 580) 334 81.9 1.1e-13 gi|149030993|gb|EDL86020.1| rCG37309 [Rattus norve ( 360) 331 81.1 1.2e-13 gi|109092594|ref|XP_001106149.1| PREDICTED: simila ( 631) 332 81.4 1.6e-13 gi|77417627|sp|Q5GH56.1|XKR7_RAT RecName: Full=XK- ( 580) 331 81.2 1.7e-13 gi|77417626|sp|Q49LS1.1|XKR7_PANTR RecName: Full=X ( 579) 327 80.3 3.2e-13 gi|74707816|sp|Q5GH72.1|XKR7_HUMAN RecName: Full=X ( 579) 327 80.3 3.2e-13 gi|119596804|gb|EAW76398.1| XK, Kell blood group c ( 619) 327 80.3 3.4e-13 gi|73992124|ref|XP_542951.2| PREDICTED: similar to ( 581) 325 79.9 4.4e-13 gi|76633210|ref|XP_596274.2| PREDICTED: similar to ( 580) 322 79.2 6.9e-13 gi|194224289|ref|XP_001916293.1| PREDICTED: simila ( 525) 321 79.0 7.4e-13 gi|56181376|gb|AAV83782.1| XK-related protein 6 [P ( 321) 289 71.8 6.6e-11 gi|18848291|gb|AAH24146.1| XKR6 protein [Homo sapi ( 362) 289 71.8 7.2e-11 gi|19353979|gb|AAH24502.1| X Kell blood group prec ( 362) 289 71.8 7.2e-11 gi|148704113|gb|EDL36060.1| X Kell blood group pre ( 382) 289 71.8 7.5e-11 gi|119586003|gb|EAW65599.1| XK, Kell blood group c ( 382) 289 71.8 7.5e-11 gi|149030269|gb|EDL85325.1| rCG52187 [Rattus norve ( 408) 289 71.9 8e-11 gi|46948379|gb|AAT07101.1| XK-related protein 6 [M ( 540) 289 72.0 9.9e-11 gi|114623565|ref|XP_528067.2| PREDICTED: XK-relate ( 616) 289 72.0 1.1e-10 gi|71153417|sp|Q5GH57.1|XKR6_RAT RecName: Full=XK- ( 638) 289 72.0 1.1e-10 gi|71153416|sp|Q5GH73.1|XKR6_HUMAN RecName: Full=X ( 641) 289 72.0 1.1e-10 gi|126303523|ref|XP_001373575.1| PREDICTED: simila ( 646) 289 72.0 1.1e-10 gi|53828944|gb|AAU94444.1| XK-related protein 6 [X ( 600) 287 71.5 1.5e-10 gi|73993782|ref|XP_543208.2| PREDICTED: similar to (1039) 286 71.5 2.6e-10 gi|119896067|ref|XP_590278.3| PREDICTED: similar t ( 631) 283 70.7 2.8e-10 gi|194041585|ref|XP_001924490.1| PREDICTED: simila ( 560) 278 69.5 5.5e-10 gi|194208303|ref|XP_001493957.2| PREDICTED: simila ( 557) 277 69.3 6.3e-10 >>gi|218675727|gb|AAI69294.2| X Kell blood group precurs (286 aa) initn: 715 init1: 715 opt: 715 Z-score: 858.8 bits: 165.4 E(): 3.9e-39 Smith-Waterman score: 715; 100.000% identity (100.000% similar) in 106 aa overlap (1-106:181-286) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ :::::::::::::::::::::::::::::: gi|218 PNGPRFGQSPSCACDDPATAFSLPPEVATSTLRSISNNRSVASDRDQKFAERDGCVPVFQ 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|218 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY 220 230 240 250 260 270 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|218 KDDALIQERLEYETTL 280 >>gi|149060989|gb|EDM11599.1| XK-related protein 4 [Ratt (356 aa) initn: 715 init1: 715 opt: 715 Z-score: 857.5 bits: 165.4 E(): 4.7e-39 Smith-Waterman score: 715; 100.000% identity (100.000% similar) in 106 aa overlap (1-106:251-356) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ :::::::::::::::::::::::::::::: gi|149 PNGPRFGQSPSCACDDPATAFSMPPEVATSTLRSISNNRSVASDRDQKFAERDGCVPVFQ 230 240 250 260 270 280 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY 290 300 310 320 330 340 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|149 KDDALIQERLEYETTL 350 >>gi|77417620|sp|Q5GH67.1|XKR4_MOUSE RecName: Full=XK-re (647 aa) initn: 715 init1: 715 opt: 715 Z-score: 853.8 bits: 165.6 E(): 7.5e-39 Smith-Waterman score: 715; 100.000% identity (100.000% similar) in 106 aa overlap (1-106:542-647) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ :::::::::::::::::::::::::::::: gi|774 PNGPRFGQSPSCACDDPATAFSLPPEVATSTLRSISNNRSVASDRDQKFAERDGCVPVFQ 520 530 540 550 560 570 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|774 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY 580 590 600 610 620 630 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|774 KDDALIQERLEYETTL 640 >>gi|77417622|sp|Q5GH59.1|XKR4_RAT RecName: Full=XK-rela (647 aa) initn: 715 init1: 715 opt: 715 Z-score: 853.8 bits: 165.6 E(): 7.5e-39 Smith-Waterman score: 715; 100.000% identity (100.000% similar) in 106 aa overlap (1-106:542-647) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ :::::::::::::::::::::::::::::: gi|774 PNGPRFGQSPSCACDDPATAFSMPPEVATSTLRSISNNRSVASDRDQKFAERDGCVPVFQ 520 530 540 550 560 570 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|774 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY 580 590 600 610 620 630 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|774 KDDALIQERLEYETTL 640 >>gi|119607162|gb|EAW86756.1| hCG1983291 [Homo sapiens] (281 aa) initn: 699 init1: 699 opt: 699 Z-score: 839.9 bits: 161.9 E(): 4.4e-38 Smith-Waterman score: 699; 98.113% identity (99.057% similar) in 106 aa overlap (1-106:176-281) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ :::::::::::.:::::::::::::::::: gi|119 PNGPRFGQSPSCACEDPAAAFTLPPDVATSTLRSISNNRSVVSDRDQKFAERDGCVPVFQ 150 160 170 180 190 200 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRPTAPSTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY 210 220 230 240 250 260 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|119 KDDALIQERLEYETTL 270 280 >>gi|119906445|ref|XP_595770.3| PREDICTED: XK, Kell bloo (429 aa) initn: 699 init1: 699 opt: 699 Z-score: 837.3 bits: 162.0 E(): 6.2e-38 Smith-Waterman score: 699; 98.113% identity (99.057% similar) in 106 aa overlap (1-106:324-429) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ ::::::::::::.::::::::::::::::: gi|119 PNGPRFGQSPSCACEDPSAAFALPPDVATSTLRSISNNRSVAGDRDQKFAERDGCVPVFQ 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRPTAPSTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY 360 370 380 390 400 410 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|119 KDDALIQERLEYETTL 420 >>gi|194036733|ref|XP_001928176.1| PREDICTED: similar to (645 aa) initn: 700 init1: 700 opt: 700 Z-score: 836.0 bits: 162.3 E(): 7.4e-38 Smith-Waterman score: 700; 98.113% identity (99.057% similar) in 106 aa overlap (1-106:540-645) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ :::::::::::::::::::::::::::::: gi|194 PNGPRFGQSPSCACEDPAAAFTLPPEVATSTLRSISNNRSVASDRDQKFAERDGCVPVFQ 510 520 530 540 550 560 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::: ::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|194 VRPTAPSTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPAPPRLQY 570 580 590 600 610 620 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|194 KDDALIQERLEYETTL 630 640 >>gi|126321102|ref|XP_001368594.1| PREDICTED: similar to (658 aa) initn: 700 init1: 700 opt: 700 Z-score: 835.9 bits: 162.3 E(): 7.5e-38 Smith-Waterman score: 700; 98.113% identity (99.057% similar) in 106 aa overlap (1-106:553-658) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ :::::::::::::::::::::::::::::: gi|126 PNGPRFGQSPSCACEDPVAAFTLPPEVATSTLRSISNNRSVASDRDQKFAERDGCVPVFQ 530 540 550 560 570 580 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::: ::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|126 VRPTAPSTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPAPPRLQY 590 600 610 620 630 640 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|126 KDDALIQERLEYETTL 650 >>gi|194214912|ref|XP_001916342.1| PREDICTED: XK, Kell b (567 aa) initn: 699 init1: 699 opt: 699 Z-score: 835.6 bits: 162.1 E(): 7.8e-38 Smith-Waterman score: 699; 98.113% identity (99.057% similar) in 106 aa overlap (1-106:462-567) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ :::::::::::.:::::::::::::::::: gi|194 PNGPRFGQSPSCACEDPVAAFTLPPEVATSTLRSISNNRSVVSDRDQKFAERDGCVPVFQ 440 450 460 470 480 490 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VRPTAPSTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY 500 510 520 530 540 550 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|194 KDDALIQERLEYETTL 560 >>gi|77417621|sp|Q49LS4.1|XKR4_PANTR RecName: Full=XK-re (650 aa) initn: 699 init1: 699 opt: 699 Z-score: 834.8 bits: 162.1 E(): 8.7e-38 Smith-Waterman score: 699; 98.113% identity (99.057% similar) in 106 aa overlap (1-106:545-650) 10 20 30 mKIAA1 TLRSISNNRSVASDRDQKFAERDGCVPVFQ :::::::::::.:::::::::::::::::: gi|774 PNGPRFGQSPSCACEDPAAAFPLPPDVATSTLRSISNNRSVVSDRDQKFAERDGCVPVFQ 520 530 540 550 560 570 40 50 60 70 80 90 mKIAA1 VRPTAPPTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|774 VRPTAPSTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPPRLQY 580 590 600 610 620 630 100 mKIAA1 KDDALIQERLEYETTL :::::::::::::::: gi|774 KDDALIQERLEYETTL 640 650 106 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 07:03:42 2009 done: Mon Mar 16 07:07:21 2009 Total Scan time: 517.030 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]