FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1295.ptfa, 91 aa
 vs ./tmplib.26680 library

1768926 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.7066+/-0.00373; mu= 12.9299+/- 0.251
 mean_var=60.2081+/-13.512, 0's: 0 Z-trim: 9  B-trim: 0 in 0/35
 Lambda= 0.1653

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0142  ( 809 res)   mbg20462                   ( 809)  119   36  0.0018
mKIAA0362  ( 806 res)   mbe05003                   ( 806)  111   34  0.0067
mFLJ00395  ( 711 res)   msj07104                   ( 711)  110   34  0.0073


>>mKIAA0142  ( 809 res)   mbg20462                        (809 aa)
 initn: 124 init1:  76 opt: 119  Z-score: 154.7  bits: 36.4 E(): 0.0018
Smith-Waterman score: 119;  38.235% identity (44.068% ungapped) in 68 aa overlap (28-91:187-249)

                  10        20        30         40         50     
mKIAA1    RGKGGLGPRVTGKVGETREKAASFLNADGPKDSLYV-AVANFEG-DEDTSSFQEGTV
                                     :. ...: : :  ::.  .::  ::..: :
mKIAA0 IKSFDSLGSQSSHSRTSKLLQSQYRSLDMTDNTNSQLVVRAKFNFQQTNEDELSFSKGDV
        160       170       180       190       200       210      

          60        70         80         90                       
mKIAA1 FEVREKNSSGWWFCQVLSGAPSWE-GWIPSNYLRK-KP                      
       ..: . . .:::      :. . . ::.::::.:. ::                      
mKIAA0 IHVTRVEEGGWW-----EGTHNGRTGWFPSNYVREIKPSEKPVSPKSGTLKSPPKGFDTT
        220            230       240       250       260       270 

mKIAA0 AINKSYYNVVLQNILETEHEYSKELQSVLSTYLRPLQTSDKLSSANTSYLMGNLEEISSF
             280       290       300       310       320       330 

>>mKIAA0362  ( 806 res)   mbe05003                        (806 aa)
 initn:  72 init1:  48 opt: 111  Z-score: 144.4  bits: 34.5 E(): 0.0067
Smith-Waterman score: 111;  34.921% identity (38.596% ungapped) in 63 aa overlap (29-87:708-768)

                 10        20        30           40         50    
mKIAA1   RGKGGLGPRVTGKVGETREKAASFLNADGPKDSL---YVAVANFE-GDEDTSSFQEGT
                                     :::  .   :..: . : :  :: ... : 
mKIAA0 HSLEAPEEDGGWSSAEELINSSDAEEDGGVGPKKLVPGKYTVVMDDEKGGPDTLAMRSGD
       680       690       700       710       720       730       

           60        70        80        90                        
mKIAA1 VFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKKP                       
       . :: :... : :. . :..  : :::.:.. :                           
mKIAA0 MVEVVEEGAEGLWYVRDLTS--SKEGWVPASSLSTLLGKSSSAQCLSSSGKIHCARQLCP
       740       750         760       770       780       790     

mKIAA0 EPAEILSPEPV
         800      

>>mFLJ00395  ( 711 res)   msj07104                        (711 aa)
 initn: 107 init1:  77 opt: 110  Z-score: 143.7  bits: 34.2 E(): 0.0073
Smith-Waterman score: 110;  31.818% identity (36.842% ungapped) in 88 aa overlap (3-89:634-710)

                                           10        20        30  
mKIAA1                             RGKGGLGPRVTGKVGETREKAASFLNADGPK-
                                     : ..: : .  ::. . .  .     ::. 
mFLJ00 ASRRPRARPPSEHSTEFLNVPDQGVAGMQRKRSIGQRPVPGVGRPKPQPRTH----GPRC
           610       620       630       640       650             

              40        50        60        70        80        90 
mKIAA1 DSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKKP
        .::  ...   : :  ::. . :.:.  ..:::::  . : :    :: .:.::..:  
mFLJ00 RALYQYIGQ---DVDELSFNVNEVIEILIEDSSGWWKGR-LHGQ---EGLFPGNYVEKI 
     660          670       680       690           700       710  




91 residues in 1 query   sequences
1768926 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:40:06 2006 done: Mon Mar 27 10:40:07 2006
 Scan time:  0.280 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]