# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj39015.fasta.nr -Q ../query/mKIAA1295.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1295, 91 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918743 sequences Expectation_n fit: rho(ln(x))= 4.7028+/-0.000178; mu= 6.4994+/- 0.010 mean_var=56.3660+/-10.984, 0's: 45 Z-trim: 57 B-trim: 0 in 0/65 Lambda= 0.170831 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148691807|gb|EDL23754.1| RIKEN cDNA G431001E03, ( 820) 634 163.9 2.7e-38 gi|162416033|sp|A2AAY5.1|SPD2B_MOUSE RecName: Full ( 908) 634 163.9 3e-38 gi|223461423|gb|AAI41307.1| SH3 and PX domains 2B ( 908) 634 163.9 3e-38 gi|211925505|dbj|BAG81976.1| FAD49 [Mus musculus] ( 910) 634 163.9 3e-38 gi|74140592|dbj|BAE42425.1| unnamed protein produc ( 910) 634 163.9 3e-38 gi|149052238|gb|EDM04055.1| rCG32613 [Rattus norve ( 819) 622 160.9 2.1e-37 gi|109490465|ref|XP_001063612.1| PREDICTED: simila ( 907) 622 161.0 2.3e-37 gi|73954039|ref|XP_546237.2| PREDICTED: similar to ( 884) 548 142.7 6.9e-32 gi|119581838|gb|EAW61434.1| SH3 and PX domains 2B, ( 770) 545 141.9 1e-31 gi|119581837|gb|EAW61433.1| SH3 and PX domains 2B, ( 773) 545 141.9 1e-31 gi|114603383|ref|XP_527118.2| PREDICTED: SH3 and P ( 910) 545 142.0 1.2e-31 gi|162317618|gb|AAI56243.1| SH3 and PX domains 2B ( 911) 545 142.0 1.2e-31 gi|74132096|gb|AAZ99795.1| adaptor protein HOFI [H ( 911) 545 142.0 1.2e-31 gi|162416204|sp|A1X283.2|SPD2B_HUMAN RecName: Full ( 911) 545 142.0 1.2e-31 gi|194219601|ref|XP_001499665.2| PREDICTED: SH3 an ( 900) 544 141.7 1.4e-31 gi|109079767|ref|XP_001095586.1| PREDICTED: simila ( 909) 540 140.8 2.8e-31 gi|119912968|ref|XP_596546.3| PREDICTED: similar t ( 886) 539 140.5 3.2e-31 gi|126291462|ref|XP_001380540.1| PREDICTED: simila (1063) 505 132.2 1.2e-28 gi|149633044|ref|XP_001507279.1| PREDICTED: simila ( 907) 491 128.7 1.2e-27 gi|118097320|ref|XP_425197.2| PREDICTED: similar t ( 845) 437 115.4 1.1e-23 gi|224141661|ref|XP_002199663.1| PREDICTED: SH3 an ( 741) 401 106.4 4.8e-21 gi|224067431|ref|XP_002195573.1| PREDICTED: SH3 an ( 883) 401 106.5 5.6e-21 gi|159164387|pdb|2EGC|A Chain A, Solution Structur ( 75) 273 74.2 2.4e-12 gi|73998786|ref|XP_544004.2| PREDICTED: similar to (1141) 277 76.0 1.1e-11 gi|118092997|ref|XP_421741.2| PREDICTED: similar t (1108) 273 75.0 2.1e-11 gi|55957188|emb|CAI13963.1| SH3 and PX domains 2A ( 940) 272 74.7 2.2e-11 gi|221043862|dbj|BAH13608.1| unnamed protein produ ( 965) 272 74.7 2.2e-11 gi|221040018|dbj|BAH11772.1| unnamed protein produ ( 968) 272 74.7 2.2e-11 gi|194041971|ref|XP_001926932.1| PREDICTED: SH3 an ( 977) 272 74.7 2.3e-11 gi|221040938|dbj|BAH12146.1| unnamed protein produ ( 978) 272 74.7 2.3e-11 gi|221045354|dbj|BAH14354.1| unnamed protein produ ( 982) 272 74.7 2.3e-11 gi|221045170|dbj|BAH14262.1| unnamed protein produ (1000) 272 74.7 2.3e-11 gi|193786440|dbj|BAG51723.1| unnamed protein produ (1054) 272 74.7 2.4e-11 gi|55957186|emb|CAI13961.1| SH3 and PX domains 2A (1059) 272 74.8 2.4e-11 gi|109090476|ref|XP_001113943.1| PREDICTED: simila (1074) 272 74.8 2.4e-11 gi|149689696|ref|XP_001497955.1| PREDICTED: SH3 an (1100) 272 74.8 2.5e-11 gi|119570010|gb|EAW49625.1| SH3 and PX domains 2A, (1105) 272 74.8 2.5e-11 gi|114632680|ref|XP_508015.2| PREDICTED: SH3 multi (1105) 272 74.8 2.5e-11 gi|74746151|sp|Q5TCZ1.1|SPD2A_HUMAN RecName: Full= (1133) 272 74.8 2.5e-11 gi|224052767|ref|XP_002193780.1| PREDICTED: SH3 an (1080) 270 74.3 3.4e-11 gi|149634568|ref|XP_001512205.1| PREDICTED: simila (1081) 269 74.0 4.1e-11 gi|194678792|ref|XP_601330.4| PREDICTED: similar t ( 699) 266 73.2 4.8e-11 gi|221040202|dbj|BAH11864.1| unnamed protein produ ( 982) 263 72.5 1.1e-10 gi|148710088|gb|EDL42034.1| SH3 and PX domains 2A (1073) 263 72.5 1.1e-10 gi|126273155|ref|XP_001369016.1| PREDICTED: simila (1105) 263 72.5 1.2e-10 gi|181336814|ref|NP_032044.2| SH3 and PX domains 2 (1124) 263 72.5 1.2e-10 gi|81886907|sp|O89032.1|SPD2A_MOUSE RecName: Full= (1124) 263 72.5 1.2e-10 gi|126273153|ref|XP_001368985.1| PREDICTED: simila (1133) 263 72.6 1.2e-10 gi|149040341|gb|EDL94379.1| SH3 and PX domains 2A (1073) 261 72.0 1.6e-10 gi|94732488|emb|CAK11222.1| novel protein similar (1068) 256 70.8 3.7e-10 >>gi|148691807|gb|EDL23754.1| RIKEN cDNA G431001E03, iso (820 aa) initn: 634 init1: 634 opt: 634 Z-score: 843.8 bits: 163.9 E(): 2.7e-38 Smith-Waterman score: 634; 100.000% identity (100.000% similar) in 91 aa overlap (1-91:730-820) 10 20 30 mKIAA1 RGKGGLGPRVTGKVGETREKAASFLNADGP :::::::::::::::::::::::::::::: gi|148 RVAPAAGRALLVPPKAKPFLSNSSVGQDDMRGKGGLGPRVTGKVGETREKAASFLNADGP 700 710 720 730 740 750 40 50 60 70 80 90 mKIAA1 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK 760 770 780 790 800 810 mKIAA1 P : gi|148 P 820 >>gi|162416033|sp|A2AAY5.1|SPD2B_MOUSE RecName: Full=SH3 (908 aa) initn: 634 init1: 634 opt: 634 Z-score: 843.1 bits: 163.9 E(): 3e-38 Smith-Waterman score: 634; 100.000% identity (100.000% similar) in 91 aa overlap (1-91:818-908) 10 20 30 mKIAA1 RGKGGLGPRVTGKVGETREKAASFLNADGP :::::::::::::::::::::::::::::: gi|162 RVAPAAGRALLVPPKAKPFLSNSSVGQDDMRGKGGLGPRVTGKVGETREKAASFLNADGP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK 850 860 870 880 890 900 mKIAA1 P : gi|162 P >>gi|223461423|gb|AAI41307.1| SH3 and PX domains 2B [Mus (908 aa) initn: 634 init1: 634 opt: 634 Z-score: 843.1 bits: 163.9 E(): 3e-38 Smith-Waterman score: 634; 100.000% identity (100.000% similar) in 91 aa overlap (1-91:818-908) 10 20 30 mKIAA1 RGKGGLGPRVTGKVGETREKAASFLNADGP :::::::::::::::::::::::::::::: gi|223 RVAPAAGRALLVPPKAKPFLSNSSVGQDDIRGKGGLGPRVTGKVGETREKAASFLNADGP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK 850 860 870 880 890 900 mKIAA1 P : gi|223 P >>gi|211925505|dbj|BAG81976.1| FAD49 [Mus musculus] (910 aa) initn: 634 init1: 634 opt: 634 Z-score: 843.1 bits: 163.9 E(): 3e-38 Smith-Waterman score: 634; 100.000% identity (100.000% similar) in 91 aa overlap (1-91:820-910) 10 20 30 mKIAA1 RGKGGLGPRVTGKVGETREKAASFLNADGP :::::::::::::::::::::::::::::: gi|211 RVAPAAGRALLVPPKAKPFLSNSSVGQDDMRGKGGLGPRVTGKVGETREKAASFLNADGP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|211 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK 850 860 870 880 890 900 mKIAA1 P : gi|211 P 910 >>gi|74140592|dbj|BAE42425.1| unnamed protein product [M (910 aa) initn: 634 init1: 634 opt: 634 Z-score: 843.1 bits: 163.9 E(): 3e-38 Smith-Waterman score: 634; 100.000% identity (100.000% similar) in 91 aa overlap (1-91:820-910) 10 20 30 mKIAA1 RGKGGLGPRVTGKVGETREKAASFLNADGP :::::::::::::::::::::::::::::: gi|741 RVAPAAGRALLVPPKAKPFLSNSSVGQDDMRGKGGLGPRVTGKVGETREKAASFLNADGP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK 850 860 870 880 890 900 mKIAA1 P : gi|741 P 910 >>gi|149052238|gb|EDM04055.1| rCG32613 [Rattus norvegicu (819 aa) initn: 622 init1: 622 opt: 622 Z-score: 827.8 bits: 160.9 E(): 2.1e-37 Smith-Waterman score: 622; 96.703% identity (100.000% similar) in 91 aa overlap (1-91:729-819) 10 20 30 mKIAA1 RGKGGLGPRVTGKVGETREKAASFLNADGP :::::::::..::::::::::::::::::: gi|149 RAIPASGRALLVPPKAKPFLSNSSVGQDDIRGKGGLGPRIAGKVGETREKAASFLNADGP 700 710 720 730 740 750 40 50 60 70 80 90 mKIAA1 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|149 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCRVLSGAPSWEGWIPSNYLRKK 760 770 780 790 800 810 mKIAA1 P : gi|149 P >>gi|109490465|ref|XP_001063612.1| PREDICTED: similar to (907 aa) initn: 622 init1: 622 opt: 622 Z-score: 827.2 bits: 161.0 E(): 2.3e-37 Smith-Waterman score: 622; 96.703% identity (100.000% similar) in 91 aa overlap (1-91:817-907) 10 20 30 mKIAA1 RGKGGLGPRVTGKVGETREKAASFLNADGP :::::::::..::::::::::::::::::: gi|109 RAIPASGRALLVPPKAKPFLSNSSVGQDDIRGKGGLGPRIAGKVGETREKAASFLNADGP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|109 KDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCRVLSGAPSWEGWIPSNYLRKK 850 860 870 880 890 900 mKIAA1 P : gi|109 P >>gi|73954039|ref|XP_546237.2| PREDICTED: similar to neu (884 aa) initn: 453 init1: 453 opt: 548 Z-score: 728.8 bits: 142.7 E(): 6.9e-32 Smith-Waterman score: 548; 84.946% identity (93.548% similar) in 93 aa overlap (1-91:792-884) 10 20 mKIAA1 RGKGGLGPRVTGKVGETREK--AASFLNAD :::::::: ..::.::.::: :: : .:: gi|739 KAAPAPGRALLVPPKAKPFLSNSSGGHDDMRGKGGLGPWLVGKIGENREKVAAAPFPSAD 770 780 790 800 810 820 30 40 50 60 70 80 mKIAA1 GPKDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLR : ::::::::::::::.::::::::::::::::.:::::::::::::::::::::::::. gi|739 GSKDSLYVAVANFEGDKDTSSFQEGTVFEVREKSSSGWWFCQVLSGAPSWEGWIPSNYLK 830 840 850 860 870 880 90 mKIAA1 KKP ::: gi|739 KKP >>gi|119581838|gb|EAW61434.1| SH3 and PX domains 2B, iso (770 aa) initn: 459 init1: 459 opt: 545 Z-score: 725.6 bits: 141.9 E(): 1e-31 Smith-Waterman score: 545; 87.097% identity (92.473% similar) in 93 aa overlap (1-91:678-770) 10 20 mKIAA1 RGKGGLGPRVTGKVGETREKAA--SFLNAD ::::.::: :::.::.::::: : ::: gi|119 RAAPTPGRALLVPPKAKPFLSNSLGGQDDTRGKGSLGPWGTGKIGENREKAAAASVPNAD 650 660 670 680 690 700 30 40 50 60 70 80 mKIAA1 GPKDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLR : :::::::::.::::.::::::::::::::::::::::::::::::::::::::::::: gi|119 GLKDSLYVAVADFEGDKDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLR 710 720 730 740 750 760 90 mKIAA1 KKP ::: gi|119 KKP 770 >>gi|119581837|gb|EAW61433.1| SH3 and PX domains 2B, iso (773 aa) initn: 459 init1: 459 opt: 545 Z-score: 725.6 bits: 141.9 E(): 1e-31 Smith-Waterman score: 545; 87.097% identity (92.473% similar) in 93 aa overlap (1-91:681-773) 10 20 mKIAA1 RGKGGLGPRVTGKVGETREKAA--SFLNAD ::::.::: :::.::.::::: : ::: gi|119 RAAPTPGRALLVPPKAKPFLSNSLGGQDDTRGKGSLGPWGTGKIGENREKAAAASVPNAD 660 670 680 690 700 710 30 40 50 60 70 80 mKIAA1 GPKDSLYVAVANFEGDEDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLR : :::::::::.::::.::::::::::::::::::::::::::::::::::::::::::: gi|119 GLKDSLYVAVADFEGDKDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLR 720 730 740 750 760 770 90 mKIAA1 KKP ::: gi|119 KKP 91 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 14:30:11 2009 done: Fri Mar 13 14:33:44 2009 Total Scan time: 491.460 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]