FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1893.ptfa, 969 aa vs ./tmplib.26680 library 1768048 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.9015+/-0.00957; mu= -20.8889+/- 0.628 mean_var=502.0626+/-122.659, 0's: 0 Z-trim: 6 B-trim: 137 in 1/35 Lambda= 0.0572 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA2027 ( 817 res) mbg08063 ( 817) 336 43 0.00023 >>mKIAA2027 ( 817 res) mbg08063 (817 aa) initn: 326 init1: 211 opt: 336 Z-score: 170.7 bits: 42.8 E(): 0.00023 Smith-Waterman score: 388; 23.377% identity (27.123% ungapped) in 847 aa overlap (168-968:39-814) 140 150 160 170 180 190 mKIAA1 VFSGKMDGNSLKQADSTSTRKEEAGSLRNEESMLKGKAEPMIYGKGEPGTVG---RVD-- :..: : : .: ::: :: mKIAA2 AQRGTPHRSRPVQPRTHPYGFPLSSNYFPVENIL-GIDTGAILERGPMGTVPDPLRVTKA 10 20 30 40 50 60 200 210 220 230 240 mKIAA1 --CTASGAENSGSLGKVDMPCSSKVDIVSPG-GDNAGSLR-KVETISSGKMDPKTENVMH .::: :.: . .. : .. : . : :. . : .. . ... :. . . . mKIAA2 SIVAASGKEESRGESQSVSPQPAQPDNNASGIGNVPAELSLQLSAAAQALMQACVSESSQ 70 80 90 100 110 120 250 260 270 280 290 300 mKIAA1 SRRERPGSTGEGDLVSLRENDMKPPDNTDSASTKKTDPEFSGKLTPG--SSGKTELVSS- . :: .::. :: .. : ::. ..:.. .:: .... ::.:. mKIAA2 QDMASPGVFSEGEPVSPKQ---KTPDDFLLHGSKESA-------APGLNATAQKELISAP 130 140 150 160 170 310 320 330 340 350 360 mKIAA1 --VTVAPVTSENVN---PVCSGGAGPAAVGNSETLSSVKKDPQLLGKKEAVSSGEGGSVS ..:. : . .. : : : : . . .: ..:. : :. . . . mKIAA2 CLISVVQHTHHAIQRDAPNTSTCAVPEGSLVKSEANSNGENPEKPGCPARVTCCSSKN-Q 180 190 200 210 220 230 370 380 390 400 410 420 mKIAA1 VRMAETVSARQPEGMFPAKTDSTSSNSTGPSGRADPVSLRNSELVSPVKPERLSSGQAER . . : .. .:.. . : .: .. : :... : . : :: : : . .. .. mKIAA2 EGLCDFPSPENSQGILQTP-DIASPSADRPEGEGQKV-INNITAVSSEPPVREGCSENKQ 240 250 260 270 280 290 430 440 450 460 470 480 mKIAA1 VSLVKTETLSSGKEDPRSSRRVDHTTVTGNMQTSQKGNPESSGKTDLGSSSSGDTRSLGT : . .: . .:.: : : : : .:. . .. .. . ..: . mKIAA2 PSATALNTTAERSENPPPS----HLTSKGATCSSEARQALLPAQYPVSRFKEASTMTCQ- 300 310 320 330 340 490 500 510 520 530 mKIAA1 WGSLSAAKAEVTEGKGDPQPWKKASLPASEKTDPLASSKAGSA-----SQGKAETVSPGE . :.:: ::. :.. :. : . : ... . : . : ... : . :. mKIAA2 --AESGAK-EVS-GRA----WQDAEVQAVASVESRSVSTSPSILPAYLKENPAPELENGQ 350 360 370 380 390 400 540 550 560 570 580 590 mKIAA1 --VDAMTLGKTVPTSSGKTAL-VSPGKVDLMTSERAEGI-PELQASEKGNPVNSTRVDTG . .. :: .::. : .: . :: . :.. .: :... .. .. . : mKIAA2 EQLRVICHGK----GSGNHLLELSNSMVDSQESRQCPSIVPQVHI--QAATATPAAFKGG 410 420 430 440 450 600 610 620 630 640 650 mKIAA1 ATGSTEPKSGVKVITQIPGATSPGKVETPSLQKEQPQLSEKTDPSRKVDPPTTVEPVSLG ...: :.: . . .:: ..:: .:. .:: . . . . : ..: .. mKIAA2 CKPANQPAEGLK--SPLIHVTSSQNTET----EEDLRLSASKEATSR--QPEGTNP-DFQ 460 470 480 490 500 660 670 680 690 mKIAA1 KADSAS----PSPRKAE-SQTSAKTVPQAPD---------KATSSLRQSD--GTPYSSAQ ::.. . :. .:: .: .. :. :. :: :: . :. : .. mKIAA2 KANAIGQISLPAGSQAEINQGLWNSGPREPEIVVKTAKDHKAESSCKPSNSGGGANKDYP 510 520 530 540 550 560 700 710 720 730 740 750 mKIAA1 PQR-DTRSIGSLPEREPSASTSQKDLAAAAAQKSPSAEAAAPPPGPRTRDNFTKAPSWDA :. : . . ...:.. :: : .: . . .: . .:... . ..: . mKIAA2 PESLDPTDKKGAKDKKPASPLIVKDHAPGA---TSTLDAKTLLLNPKSQVKEGEGPEVSP 570 580 590 600 610 620 760 770 780 790 800 810 mKIAA1 GAPPPREDAGTQAGAQACVSVAVSPMSPQDGAGGPAFSFQAAPRAPSPAPRPPSRRDAGL . : :.. . ....: :.::.: : .. :.:: . . :: : mKIAA2 APSPGRKSQQNTLEELRQPKTVMSLSLPSDGTGDS--SPGSGKRTPSLSVKASPRR--GS 630 640 650 660 670 820 830 840 850 860 870 mKIAA1 QVSLGAAETRSVATGPMTPQAAAPPAVPPVFPEVRVRPGSVLAAALAPQEATEPVRDVSW .:: : .: ::: .. : : . . : : . . .. :::: : mKIAA2 RVSEFLKELSVTA-------AAAQVGLTP--GEKKKQLG---ADSKLHLKQSKRVRDVVW 680 690 700 710 720 880 890 900 910 920 930 mKIAA1 DEKGMTWEVYGASMEVEVLGMAIQKHLERQIEEHGRQGAPAPAPPPAVRAGPG---RAGS :..::::::::::.. : ::.:::.::.:::.:: . :.. : :. : mKIAA2 DDQGMTWEVYGASLDPESLGVAIQNHLQRQIREHEK----------IVKTQSGQTRRSIS 730 740 750 760 770 940 950 960 mKIAA1 VRTAPAEGAAKRPPGLFRALLQSVRRPRCCSRAGPTAE .. .. : :.....::. ::: :: : .:.. mKIAA2 SDSSSSKKLKGRQHGVLQSMLQNFRRPNCCVRPAPSSVLD 780 790 800 810 969 residues in 1 query sequences 1768048 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:55:20 2006 done: Mon Mar 27 10:55:21 2006 Scan time: 1.000 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]