FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00197.ptfa, 362 aa
 vs ./tmplib.26680 library

1768655 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.7983+/-0.0054; mu= 5.5069+/- 0.361
 mean_var=141.1881+/-32.752, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1079

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1617  ( 948 res)   mbp18039                   ( 948)  219   45 1.8e-05


>>mKIAA1617  ( 948 res)   mbp18039                        (948 aa)
 initn: 269 init1: 129 opt: 219  Z-score: 190.5  bits: 45.2 E(): 1.8e-05
Smith-Waterman score: 219;  40.230% identity (41.667% ungapped) in 87 aa overlap (274-360:858-941)

           250       260       270       280       290       300   
mFLJ00 PSGGSSSPGLRLPASSPKRNGTAIEGNRCAPSPSPEVQDTRRPSSRNPSTWTVEDVVRFV
                                     :  : . .. .     ::  :.: :::::.
mKIAA1 PVERARRVRTVPTTASSNNRVKGPLVRIVKPEDSSQSDEEKLILESNPLEWSVTDVVRFI
       830       840       850       860       870       880       

           310       320       330       340       350       360   
mFLJ00 KDADPEALGPHVELFRKHEIDGNALLLLRSDMIMKYLGLKLGPALKLCYHIDKLKQAKF 
       : .:    .: ...:....:::.:::::    ... . ::::::.:::..:...: :   
mKIAA1 KLTD---CAPLARIFQEQDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIERVKVAFYA
       890          900       910       920       930       940    

mKIAA1 QYAS
           




362 residues in 1 query   sequences
1768655 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:07:59 2006 done: Mon Mar 27 10:07:59 2006
 Scan time:  0.590 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]